Job Description P0ACR4 Confidence 41.88% Date Thu Jan 5 11:18:48 GMT 2012 Rank 322 Aligned Residues 200 % Identity 8% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	D	N	G	A	I	R	I	Y	A	S	S	T	I	G	N	Y	I	L	P	A	V	I	A	R	Y	R	H	D	Y	P	Q	L	P	I	E	L	S	V	G	N	S	Q	D	V	M	Q	A	V	L	D	F	R	V	D	I	G	F	I	E	G	P	C	H	S	T	E	I	I	S	E	P	W	L	E	D	E	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D	R	D	Y	K	L	T	I	A
Template Known Secondary structure			S											T	T																											S		T	T	S								T	S		S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																			.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure														.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	A	A	P	T	S	P	L	A	R	G	.	.	P	V	T	L	E	Q	L	A	A	A	P	W	I	L	R	E	R	G	S	G	T	R	E	I	V	D	Y	L	L	L	S	H	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	E	M	A	M	E	L	G	N	S	E	A	I
Query Conservation														.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q
Template Known Secondary structure														S	S		S		S	T	T			T	T								S														T	T	S					T	T			S	S			G	G	G					T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	A	V	R	H	G	L	G	I	S	C	L	S	R	R	V	I	E	D	Q	L	Q	A	G	T	L	S	E	V	A	V	P	L	P	R	L	M	R	T	L	W	R	I	H	H	R	Q	K	H	L	S	N	A	L	R	R	F	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N	V	Q	N	E	N	V	Q	N	F	V	K
Template Known Secondary structure						T	T	T	S	S										G	G	G	T								S					S	S	S	S									T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions