 |
Job Description | P67699 | Confidence | 49.35% | Date | Thu Jan 5 12:10:48 GMT 2012 |
Rank | 445 | Aligned Residues | 43 |
% Identity | 28% | Template | d1aoya_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| Arginine repressor (ArgR), N-terminal DNA-binding domain
|
Resolution | UNK |
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | |
. | . | . | . | . | . | . | . | . | 20 | . | . | |
. | . | . | . | . | . | . | 30 | . | |
|
|
|
|
. | |
. | . | . | . | . | . | . | 40 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  | . |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  | . | . | . | . | . |  | . |
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
| . |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | M | A | N | H | P | R | P | G | . |
D | I | I | Q | E | S | L | D | E | L | N | V | . |
S | L | R | E | F | A | R | A | M | . |
. |
. |
. |
. |
E | . |
I | A | P | S | T | A | S | R | L | L | T |
Query Conservation |   |
|   |   |   |   |   |   |   |
|
| . |   |   |
|
|   |   |
|   |   |   |
|
| . |
|
|   |
|
|
|   |   |   | . | . | . | . | . |
| . |
|
|   |   |   |
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|   |   |   |
|   |   |
|
|   |
|
|   |   |   |   |
|   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|   |
Template Sequence |   |
M | R | S | S | A | K | Q | E | E | L | V | K | A | F | K | A | L | L | K | E | E | K | F | S | S | Q | G | E | I | V | A | A | L | Q | E | Q | G | F | D | N | I | N | Q | S | K | V | S | R | M | L | T |
Template Known Secondary structure |   |
|
|
|
|
|
| S | T | T |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
| S |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|