Job Description P39286 Confidence 98.35% Date Thu Jan 5 11:58:58 GMT 2012 Rank 89 Aligned Residues 162 % Identity 15% Template c3r7wC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:gtp-binding protein gtr1; PDBTitle: crystal structure of gtr1p-gtr2p complex Resolution 2.77 Å

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		32	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H	E	R	T	S	V	L	T
Query Conservation													.	.	.
Alig confidence													.	.	.																.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation																															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Sequence		K	L	L	L	X	G	R	S	G	S	G	K	S	S	X	R	S	I	I	F	S	N	Y	S	A	F	D	T	R	.	.	.	R	L	G	A	T	I	D	V	E	H	S	H	L	R	F	L	G	N	X	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	D	.	C	G	G	Q	D	V	F	X
Template Known Secondary structure									T	T	S											S				T	T	G	G	G	.	.	.	G						S									T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.				.				S
Template Predicted Secondary structure																															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.															.	60	.		.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.
Predicted Secondary structure																																													.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	L	.	.	.	.	.	Q	I	E	P	I	I	V	L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	.	.	.	.	.	.	.	.	N	E
Query Conservation																																													.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	Y	F	T	K	Q	K	D	H	I	F	Q	X	V	Q	V	L	I	H	V	F	D	V	E	S	T	E	V	L	K	D	I	E	I	F	A	K	A	L	K	Q	L	R	K	Y	S	P	D	A	K	I	F	V	L	L	H	K	X	D	L	V	Q	L	D	K	R	E	E	L	F	Q	I	X	X	K	N	L	S	E
Template Known Secondary structure						T	T	T						T	T										T	T		T	T																				T	T										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	D	I	Y	R	N	I	G	Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L	T	G	R	I	S	I	F	A	G	Q	S	G	V	G	K	S	S	L	L	N	A	L	L	G	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	S	E	F	G	F	P	N	L	I	G	F	P	T	S	I	W	D	E	S	L	Y	K	A	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	I	V	C	S	L	I	P	N
Template Known Secondary structure					T	T	T			S								T	T	S	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T		S	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																				.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions