Job Description P39286 Confidence 97.45% Date Thu Jan 5 11:58:58 GMT 2012 Rank 168 Aligned Residues 161 % Identity 16% Template c3clvA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c Resolution 1.89 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		S	K	E	K	P	D	Y	D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H
Query Conservation																				.	.	.
Alig confidence																				.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	K	K	S	S	Y	K	T	V	L	L	G	E	S	S	V	G	K	S	S	I	V	L	R	L	T	K	D	T	F	H	E	N	T	N	T	T	I	G	A	S	F	C	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	V	V	N	L	N	D	N	Y	N	E	N	L	C	N	I	K	F	D	I	W	D	T
Template Known Secondary structure						S	S									T	T	S	S											S				S	S						S					.	.	.	.	.	.	.	.	.	.	.	.						T	T					T	T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.													.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		E	R	T	S	V	L	T	R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	.	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	L	Q	I	E	P	I	I	V	L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	N	E	Q	M	D	I	Y
Query Conservation																																	.
Alig confidence											.	.	.	.	.																		.
Template Conservation											.	.	.	.	.
Template Sequence		A	G	Q	E	R	Y	A	S	I	.	.	.	.	.	V	P	L	Y	Y	R	G	A	T	C	A	I	V	V	F	D	I	S	N	S	N	T	L	D	R	A	K	T	W	V	N	Q	L	K	I	S	S	N	Y	I	I	I	L	V	A	N	K	I	D	K	N	F	Q	V	D	I	L	E	V	Q	K	Y	A	Q	D	N
Template Known Secondary structure		T	T	G	G	G		T	T	T	.	.	.	.	.						T	T		S								T	T																			S											T	T					S												T
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.						110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	I	G	Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	N	L	L	F	I	Q	T	S	A	K	T	G	T	N	I	K	N	I	F	Y	M	L
Template Known Secondary structure		.	.	.	T								T	T	T		T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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