Job Description P39286 Confidence 97.35% Date Thu Jan 5 11:58:58 GMT 2012 Rank 175 Aligned Residues 151 % Identity 15% Template c3bbpA_ PDB info PDB header:protein transport/splicing Chain: A: PDB Molecule:ras-related protein rab-6a; PDBTitle: rab6-gtp:gcc185 rab binding domain complex Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		Y	D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H	E	R	T	S	V	L
Query Conservation														.	.	.
Alig confidence														.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	L	V	F	L	G	E	Q	S	V	G	K	T	S	L	I	T	R	F	M	Y	D	S	F	D	N	T	Y	Q	A	T	I	G	I	D	F	L	S	K	T	M	Y	L	E	D	R	T	V	R	L	Q	L	W	D	T	A	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	T	T	S	S										T	S					S						S											T	T													S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		T	R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	.	.	.	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	L	Q	I	E	P	I	I	V	L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	N	E	Q	M	D	I	Y	R	N	I	G
Query Conservation																														.	.	.
Alig confidence		.	.	.																										.	.	.																																					.
Template Conservation		.	.	.																																																																	.
Template Sequence		.	.	.	R	F	R	S	L	I	P	S	Y	I	R	D	S	T	V	A	V	V	V	Y	D	I	T	N	V	N	S	F	Q	Q	T	T	K	W	I	D	D	V	R	T	E	R	G	S	D	V	I	I	M	L	V	G	N	K	T	D	L	A	D	K	R	Q	V	S	.	I	E	E	G	E	R	K	A	K	E	L	N
Template Known Secondary structure		.	.	.	G	G	G	T	T						T	T		S								T	T							T													T	T	S	S									G	G	G		T	T			S		.											T	T
Template Predicted Secondary structure		.	.	.																																																																	.
Template SS confidence
					74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	F	I	E	T	S	A	K	A	G	Y	N	V	K	Q	L	F	R	R	V
Template Known Secondary structure								B	T	T	T	T	B	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions