Job Description P39286 Confidence 98.88% Date Thu Jan 5 11:58:58 GMT 2012 Rank 45 Aligned Residues 169 % Identity 13% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																										.	.	.							.	.	.	.	.	.
Query SS confidence																																										.	.	.							.	.	.	.	.	.
Query Sequence		K	N	K	L	S	K	G	Q	Q	R	R	V	N	A	N	H	Q	R	R	L	K	T	S	K	E	K	P	D	Y	D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	.	.	.	.	.	.	G	M	H	A	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L
Query Conservation																																										.	.	.							.	.	.	.	.	.
Alig confidence																																										.	.	.							.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	L	A	Q	V	L	L	Q	K	V	L	L	Y	H	R	E	Q	E	Q	S	N	K	G	K	P	L	A	F	R	V	G	L	S	G	P	P	G	A	G	K	S	T	F	I	E	Y	F	G	K	M	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	L	S	R	D	M	N	A	Y	I	R	P	T	R
Template Known Secondary structure																						T	T	T	T			S	S									T	T	S	S															T	T												S	S	S		T	T							T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	G	D	R	V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H	E	R	T	S	V	L	T	R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	L	Q	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	N	E	A	I	L	L	C	.	.	.	.	.	.	.	.	.	E	G	A	G	Y	D	I	I	L	I	E	.	.	.	.	.	.	.	.	T	V	G	Q	S	E	F	A	V	A	D	M	V	D	M	F	V	L	L	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	E	M
Template Known Secondary structure		T									.	.	.	.	.	.	.	.	.			T	T		S						.	.	.	.	.	.	.	.											T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.										.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.																		.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.									.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.
Query Sequence		E	P	I	I	V	L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	N	E	Q	M	D	I	Y	R	N	.	.	.	.	.	.	.	.	I	G	Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L
Query Conservation																															.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	L	V	A	V	T	K	S	D	G	D	L	I	V	P	A	R	R	I	Q	A	E	Y	V	S	A	L	K	L	L	R	K	R	S	Q	V	W	K	P	K	V	I	R	I	S	A	R	S	G	E	G	I	S	E	M	W	D	K	M
Template Known Secondary structure			S								S	T	T	S	S															T	T	S			S		S	S										T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions