 |
Job Description | P39286 | Confidence | 99.00% | Date | Thu Jan 5 11:58:58 GMT 2012 |
Rank | 34 | Aligned Residues | 86 |
% Identity | 22% | Template | c2plfA_ |
PDB info |
PDB header:translation | Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; |
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
|
Resolution | 2.90 Å |
|
 |
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
. | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | |
|
|
|
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | N | I | D | Q | I | V | I | V | S | A | I | L | P | E | L | S | L | N | I | I | D | R | Y | L | V | A | C | E | T | L | Q | I | . |
E | P | I | I | V | L | N | K | I | D | L | L | D | D | E | G | M | A | F | V | N | E | Q | M | D | I | Y | . |
. |
. |
. |
R | N | I | G | Y | R | V | L | M | V | S | S | H | T |
Query Conservation |   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |   |
| . |   |   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
| . | . | . | . |   |   |   |
|   |   |
|   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
Template Sequence |   |
A | A | L | M | D | G | A | I | L | V | V | A | A | N | E | P | F | P | Q | P | Q | T | R | E | H | F | V | A | L | G | I | I | G | V | K | N | L | I | I | V | Q | N | K | V | D | V | V | S | K | E | E | A | L | S | Q | Y | R | Q | I | K | Q | F | T | K | G | T | W | A | E | N | V | P | I | I | P | V | S | A | L | H |
Template Known Secondary structure |   |
T | T | S |
| S |  |  |  |  |  |  |  | T | T | S |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |
| G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T | S | G | G | G | G |
|
|  |  |  |
| B | T | T | T |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
  |
  |   |
195 | . | . | . | . | 200 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | D | G | L | K | P | L | E | E | A | L |
Query Conservation |   |
|   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|   |   |   |
|
Template Sequence |   |
K | I | N | I | D | S | L | I | E | G | I |
Template Known Secondary structure |   |
T | B | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|