 |
Job Description | P39286 | Confidence | 98.37% | Date | Thu Jan 5 11:58:58 GMT 2012 |
Rank | 88 | Aligned Residues | 84 |
% Identity | 19% | Template | c2hdnJ_ |
PDB info |
PDB header:translation | Chain: J: PDB Molecule:elongation factor ef-tu; |
PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
|
Resolution | 2.80 Å |
|
 |
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | |
. | . | . | . | . | 160 | . | . | . | . | . | |
. | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 190 | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |  |  |  |  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | N | I | D | Q | I | V | I | V | S | A | I | L | P | E | L | S | L | N | I | I | D | R | Y | L | V | A | C | E | T | L | Q | I | E | . |
P | I | I | V | L | N | K | I | D | L | L | . |
D | D | E | G | M | A | F | V | N | E | Q | M | D | I | Y | R | N | . |
. |
. |
. |
. |
. |
I | G | Y | R | V | L | M | V | S |
Query Conservation |   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |   |
|   | . |   |
|
|
|
|
|
|   |
|
|   | . |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   | . | . | . | . | . | . |   |
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|
|
|
|
|
|
|   |   |
|   |   |   |
|
|   |
| . |
|
|   |
|   |   |   |
|
|
|   |   |   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
A | A | Q | M | D | G | A | I | L | V | V | A | A | T | D | G | P | M | P | Q | T | R | E | . |
H | I | L | L | G | R | Q | V | G | V | P | Y | I | I | V | F | L | N | K | C | D | M | V | D | D | E | E | L | L | E | L | V | E | M | E | V | R | E | L | L | S | Q | Y | D | F | P | G | D | D | T | P | I | V | R | G | S |
Template Known Secondary structure |   |
S | S |
|
| S | S |  |  |  |  |  |  | T | T | T |
| S |
|  |  |  |  |  | . |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  |  |
| T | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| T | T | T |
|
|  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
95 | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |
  |
  |   |
192 | . | . | . | . | . | . | . | 200 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | H | T | Q | D | G | L | K | P | L | E | E | A |
Query Conservation |   |
|   |   |
|   |
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |
|   |   |   |   |   |   |   |
Template Sequence |   |
A | L | K | A | L | E | G | D | A | E | W | E | A |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|