Job Description P39286 Confidence 98.99% Date Thu Jan 5 11:58:58 GMT 2012 Rank 36 Aligned Residues 153 % Identity 18% Template c1zo1I_ PDB info PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex Resolution 13.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		E	K	P	D	Y	D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H	E	R
Query Conservation																		.	.	.
Alig confidence																		.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	E	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	.	.	.	.	.	H	A	A
Template Known Secondary structure													S	T	T	S	S	S													S	B	T	T	B							S	S		.	.	.	.	.	.	.	.	.	.	.	.					T	T	S	S									T	.	.	.	.	.	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.													.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.						.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		T	S	V	L	T	R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	L	Q	I	E	P	I	I	V	L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	N	E	Q	M	D	I	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																									.																																				.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																									.
Template Sequence		F	T	S	M	R	A	R	G	.	.	.	.	.	.	.	.	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	.	I	Q	H	A	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P
Template Known Secondary structure			T	T	S	B		S	S	.	.	.	.	.	.	.	.	S	B	S		S	S							T	T	T	B	S		T	T	T				.							T	T										S	S	S	S	T	T					T	T										T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																									.
Template SS confidence
		287	.	.	290	.	.	.	.									.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	R	N	I	G	Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I
Template Known Secondary structure		T			S	S	S								T	T	T		T	T		T	T					T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions