Job Description P39286 Confidence 99.54% Date Thu Jan 5 11:58:58 GMT 2012 Rank 16 Aligned Residues 179 % Identity 14% Template c1xzqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.											.
Query SS confidence																																										.	.	.											.
Query Sequence		K	N	K	L	S	K	G	Q	Q	R	R	V	N	A	N	H	Q	R	R	L	K	T	S	K	E	K	P	D	Y	D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	.	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R
Query Conservation																																										.	.	.											.
Alig confidence												.																														.	.	.											.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	R	L	E	R	I	K	E	K	.	L	T	E	E	L	K	K	A	D	A	G	I	L	L	N	R	G	L	R	M	V	I	V	G	K	P	N	V	G	K	S	T	L	L	N	R	L	L	N	E	D	R	A	I	V	T	D	I	P	G	T	T	R	D	V	I	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure												.							S																			T	T	G	G	G	S										T	B										S			S		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250													.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H	E	R	T	S	V	L	T	R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	L	Q	I	E	P	I	I	V
Query Conservation
Alig confidence																										.	.	.	.																																	.	.	.
Template Conservation																										.	.	.	.																																	.	.	.
Template Sequence		E	E	I	V	I	R	G	I	L	F	R	I	V	D	T	A	G	V	R	S	E	T	N	D	.	.	.	.	L	V	E	R	L	G	I	E	R	T	L	Q	E	I	E	K	A	D	I	V	L	F	V	L	D	A	S	S	P	L	D	E	.	.	.	E	D	R	K	I	L	E	R	I	K	N	K	R	Y	L	V	V
Template Known Secondary structure							T	T								S	S				S	S			S	.	.	.	.	S																	S								S	S	S					.	.	.									G	G	G	S	S
Template Predicted Secondary structure																										.	.	.	.																																	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	N	E	Q	M	D	I	Y	R	N	I	G	Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		I	N	K	V	D	V	V	E	K	I	N	E	E	E	I	K	N	K	L	G	.	.	.	.	T	D	R	H	M	V	K	I	S	A	L	K	G	E	G	L	E	K	L	E	E	S	I
Template Known Secondary structure						S	S				S									T	S	.	.	.	.		S	T	T						T	T	T	T
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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