Job Description P39286 Confidence 97.72% Date Thu Jan 5 11:58:58 GMT 2012 Rank 147 Aligned Residues 146 % Identity 13% Template c1m2oD_ PDB info PDB header:protein transport/signaling protein Chain: D: PDB Molecule:gtp-binding protein sar1; PDBTitle: crystal structure of the sec23-sar1 complex Resolution 2.50 Å

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		32	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		D	D	N	L	F	G	E	P	D	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	D	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	P	A	A	E	G	V	N	V	K	G	I	V	E	A	V	H	E	R	T	S	V	L	T
Query Conservation													.	.	.
Alig confidence													.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Sequence		K	L	L	F	L	G	L	D	N	A	G	K	T	T	L	L	H	M	L	K	N	D	R	L	A	T	L	Q	P	T	W	H	P	T	S	E	E	L	A	I	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	F	T	T	F	D	L	G	.	.	.	.	.	G
Template Known Secondary structure								S	T	T	S	S										T	S										S									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																								.	.	.	70	.	.	.	.	.						.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.
Predicted Secondary structure																																												.	.	.	.																														.	.
Query SS confidence																																												.	.	.	.																														.	.
Query Sequence		R	P	D	F	Y	D	G	V	K	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	A	C	E	T	.	.	.	.	L	Q	I	E	P	I	I	V	L	N	K	I	D	L	L	D	D	E	G	M	A	F	V	N	E	Q	M	D	I	.	.	Y	R	N
Query Conservation																																												.	.	.	.																														.	.
Alig confidence																																												.	.	.	.																														.	.
Template Conservation
Template Sequence		H	I	Q	A	R	R	L	W	K	D	Y	F	P	E	V	N	G	I	V	F	L	V	D	A	A	D	P	E	R	F	D	E	A	R	V	E	L	D	A	L	F	N	I	A	E	L	K	D	V	P	F	V	I	L	G	N	K	I	D	A	P	N	A	V	S	E	A	E	L	R	S	A	L	G	L	L	N	T	T	G
Template Known Secondary structure		S	S	G	G	G	G	T						T	T										T	T		G	G	G													T		G	G	G	T	T			B			B				T	T	S	T	T											T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	Y	R	V	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	V	E	V	F	M	C	S	V	V	M	R	N	G	Y	L	E	A	F	Q	W	L
Template Known Secondary structure				B			B			B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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