Job Description P0AC84 Confidence 99.66% Date Thu Jan 5 11:17:34 GMT 2012 Rank 49 Aligned Residues 131 % Identity 20% Template c3zq4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.											.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure													.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	L	N	S	I	P	A	F	D	D	.	.	.	N	Y	I	W	V	L	N	D	E	A	G	R	C	L	I	V	D	P	G	.	.	D	A	E	P	V	L	.	.	.	.	.	.	.	.	.	.	N	A	I	A	A	N	N	W	Q	P	E	A	I	F	L	T	H	H	H	H	D	H	V	G	G	V	K	E	L
Query Conservation													.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.		.							.											.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation																	.							.
Template Sequence		T	A	V	F	A	L	G	G	L	G	E	I	G	K	N	.	T	Y	A	V	Q	F	.	Q	D	E	I	V	L	I	D	A	G	I	K	F	P	E	D	E	L	L	G	I	D	Y	V	I	P	D	Y	T	Y	L	V	K	N	E	D	K	I	K	G	L	F	I	T	H	G	H	E	D	H	I	G	G	I	P	Y	L
Template Known Secondary structure									S	B	S	S	S	S			.							.	T	T										B				T	T	S	T	T		S											T	T	G	G	G							S								T	T
Template Predicted Secondary structure																	.							.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.														.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Query Sequence		V	E	K	F	P	Q	I	V	V	Y	G	P	Q	E	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	G	T	T	Q	V	V	K	D	G	E	T	A	F	V	L	G	H	E	F	S	V	I	A	T	P	G	H	T	L	G	H	I	C	Y	F	S	K	.	.	.	.	P	Y	L	F	C	G	D	T
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Alig confidence							.											.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation							.
Template Sequence		L	R	Q	V	N	.	I	P	V	Y	G	G	K	L	A	I	G	L	L	R	N	K	L	E	E	H	G	L	L	R	Q	T	K	L	N	I	I	G	E	D	D	I	V	K	F	R	K	T	A	V	S	F	F	R	T	T	H	S	I	P	D	S	Y	G	I	V	V	K	T	P	P	G	N	I	V	H	T	G	D	F
Template Known Secondary structure			T	T			.																					S	T	T	T	T	S							T	T						T	T									B		S	S	S	S									T	T								S
Template Predicted Secondary structure							.
Template SS confidence
		87	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		129	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	S	G	G	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	D	F	T	P
Template Known Secondary structure		B			S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions