Job Description P0AC84 Confidence 99.93% Date Thu Jan 5 11:17:34 GMT 2012 Rank 29 Aligned Residues 156 % Identity 22% Template c3spuB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																										.	.	.	.													.
Query SS confidence																										.	.	.	.													.
Query Sequence		P	A	F	D	D	N	Y	I	W	V	L	N	D	E	A	G	R	C	L	I	V	D	P	G	.	.	.	.	D	A	E	P	V	L	N	A	I	A	A	N	.	N	W	Q	P	E	A	I	F	L	T	H	H	H	H	D	H	V	G	G	V	K	E	L	V	E	K	F	P	Q	I	V	V	Y	G	P	Q	E	T	Q
Query Conservation																										.	.	.	.													.
Alig confidence								.							.											.	.	.	.													.																											.	.
Template Conservation								.							.																																																						.	.
Template Sequence		G	A	V	A	S	N	.	G	L	I	V	R	D	.	G	G	R	V	L	V	V	D	T	A	W	T	D	D	Q	T	A	Q	I	L	N	W	I	K	Q	E	I	N	L	P	V	A	L	A	V	V	T	H	A	H	Q	D	K	M	G	G	M	D	A	L	H	A	A	.	.	G	I	A	T	Y	A	N	A	L	S	N
Template Known Secondary structure								.							.	T	T									S	S															T											S	S	S					T	T							T	.	.	T
Template Predicted Secondary structure								.							.																																																						.	.
Template SS confidence
		71	.	.	.	.	.		.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.															.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																	.	.	.
Query Sequence		D	K	G	T	T	Q	V	V	K	D	G	E	T	A	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	H	E	F	S	V	I	A	T	P	G	H	T	L	G	H	I	C	Y	F	S	K	.	.	P	Y	L	F	C	G	D	T	L	F	S	G	G	C	G	R	.	.	.	L	F	E	G	T	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																	.	.	.
Template Conservation
Template Sequence		Q	L	A	P	Q	E	G	M	V	A	A	Q	H	S	L	T	F	A	A	N	G	W	V	E	P	A	T	A	P	N	F	G	P	L	K	V	F	Y	P	G	P	G	H	T	S	D	N	I	T	V	G	I	D	G	T	D	I	A	F	G	G	C	L	I	K	D	S	K	A	K	S	L	G	N	L	G	D	A	D	T
Template Known Secondary structure				G	G	G	G	T					S					B		T	T	S	B	B		G	G	G	S	T	T		T	T								S	S	S	S	S	S							T	T	S	S					T	T	T				T	T		S						T	T			T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		S	Q	M	Y	Q	S	L	K	K	L	S	A	L	.	P	D	D	T	L	V	C	C	A	H	E
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		E	H	Y	A	A	S	A	R	A	F	G	A	A	F	P	K	A	S	M	I	V	M	S	H	S
Template Known Secondary structure		T	T												S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions