Job Description P0AC84 Confidence 99.39% Date Thu Jan 5 11:17:34 GMT 2012 Rank 58 Aligned Residues 125 % Identity 25% Template c2ycbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus Resolution 3.10 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30										.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		M	N	L	N	S	I	P	A	F	D	D	.	.	.	N	Y	I	W	V	L	N	D	E	A	G	R	C	L	I	V	D	P	G	.	.	.	.	.	.	.	.	.	D	A	E	P	V	L	N	A	I	A	A	N	N	W	Q	P	E	A	I	F	L	T	H	H	H	H	D	H	V	G	G	V	K	E	L	V	E	K
Query Conservation													.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.		.							.											.	.	.	.	.	.	.	.	.
Template Conservation																	.							.
Template Sequence		A	R	L	T	A	M	G	G	F	R	E	V	G	R	S	.	C	L	Y	L	Q	T	.	P	N	S	R	V	L	L	D	C	G	V	N	V	A	G	G	D	D	K	N	S	Y	P	Y	L	N	V	P	E	F	T	L	D	S	L	D	A	V	I	I	T	H	A	H	L	D	H	S	G	F	L	P	Y	L	Y	H	Y
Template Known Secondary structure									S	S	S	S	S	S			.							.	S	S												S	S							S			T	T	S	T	T			T	T	T							S	S	S	S					T	T							T
Template Predicted Secondary structure																	.							.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80																															.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		F	P	Q	I	V	V	Y	G	P	Q	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	K	G	T	T	Q	V	V	K	D	G	E	T	A	F	V	L	.	G	H	E	F	S	V	I	A	T	P	G	H	T	L	G	H	I	C	Y
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.									.
Template Conservation																																																																							.
Template Sequence		G	Y	D	G	P	V	Y	C	T	A	P	T	R	D	L	M	T	L	L	Q	L	D	H	I	D	I	A	H	R	E	D	E	P	L	P	F	N	V	K	H	V	K	K	S	V	K	H	T	I	T	L	D	Y	G	E	V	T	D	I	A	P	D	I	R	L	T	L	H	N	.	A	G	H	I	L	G	S	A	M	A
Template Known Secondary structure		T			S																											T				S												T						T	T							T	T								.			S	S	T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.
		118	.							120	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		F	S	.	.	.	.	.	.	K	P	Y	L	F	C	G	D	T
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	H	I	G	D	G	Q	H	N	M	V	Y	T	G	D	F
Template Known Secondary structure						T	T	T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions