Job Description P0AC84 Confidence 99.38% Date Thu Jan 5 11:17:34 GMT 2012 Rank 59 Aligned Residues 124 % Identity 24% Template c2xr1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30								.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																				.	.	.	.	.	.	.																.
Query SS confidence													.	.	.																				.	.	.	.	.	.	.																.
Query Sequence		M	N	L	N	S	I	P	A	F	D	D	.	.	.	N	Y	I	W	V	L	N	D	E	A	G	R	C	L	I	V	D	P	G	.	.	.	.	.	.	.	D	A	E	P	V	L	N	A	I	A	A	N	N	W	Q	.	P	E	A	I	F	L	T	H	H	H	H	D	H	V	G	G	V	K	E	L	V	E	K	F
Query Conservation													.	.	.																				.	.	.	.	.	.	.																.
Alig confidence													.	.	.		.							.											.	.	.	.	.	.	.																.
Template Conservation																	.							.
Template Sequence		V	R	V	T	A	L	G	G	C	K	E	V	G	R	S	.	C	F	L	L	S	T	.	P	E	S	R	I	L	I	D	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P	L	N	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	V	P	L	L	F	K	Y	G
Template Known Secondary structure										S	S	S	S	B			.							.	S	S										B		S	S		S	S					T	T	S	T	T	T		S	G	G	G								S	S						T	T							T	T
Template Predicted Secondary structure																	.							.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																															.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		P	Q	I	V	V	Y	G	P	Q	E	T	Q	D	K	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	V	V	K	D	G	E	T	A	F	V	L	.	G	H	E	F	S	V	I	A	T	P	G	H	T	L	G	H	I	C	Y	F
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.										.
Template Conservation																																																																							.
Template Sequence		Y	E	G	P	V	Y	C	T	P	P	T	R	D	L	M	V	L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	I	P	Y	E	S	G	M	V	A	K	T	L	K	H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P	D	I	K	L	T	F	H	N	A	.	G	H	I	L	G	S	A	I	S	H
Template Known Secondary structure				S																											T					S											T						T	T							T	T									.	S	S	S	T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.
		119	120							.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		S	K	.	.	.	.	.	.	P	Y	L	F	C	G	D
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		F	H	I	G	D	G	L	H	N	V	V	F	T	G	D
Template Known Secondary structure					T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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