|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | E | W | Q | D | L | H | H | S | E | L | S | V | S | Q | L | Y | A | L | L | Q | L | R | C | A | V | F | V | V | E | Q | N | C | P | Y | Q | D | I | D | G | D | D | L | T | G | D | N | R | H | I | L | G | W | K | N | D | E | L | V | A | Y | A | R | I | L | K | S | D | D | D | L | E | P | V | V | I | G | R | V | I |
Query Conservation |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |
|   |   |
|   |
Template Sequence |   |
M | K | L | T | I | I | R | L | E | K | F | S | D | Q | D | R | I | D | L | Q | K | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
W | P | E | Y | S | P | S | S | L | Q | V | D | D | N | H | R | I | Y | A | A | R | F | N | E | R | L | L | A | A | V | R | V | T | L | S | . |
. |
. |
G | T | E | G | A | L | D | S | L | R |
Template Known Secondary structure |   |
|
|
|  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |
| T | T | S |
|
|
|
|
|
|
|
| S | S |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
 |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | S | E | A | L | R | G | E | K | V | G | Q | Q | L | M | S | K | T | L | E | T | C | T | H | H | W | P | D | K | P | V | Y | L | G | A | . |
. |
. |
Q | A | H | L | Q | N | F | Y | Q | S | F | G | F | I | P | V | T | E | V | Y | E | E | D | G |
Query Conservation |   |
|   |
|   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   | . | . | . |   |   |   |
|   |   |
|
|   |
|   |
|
|   |   |   |
|
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | R | E | V | T | R | R | R | G | V | G | Q | Y | L | L | E | E | V | L | R | N | N | P | G | V | . |
S | C | W | W | M | A | D | A | G | V | E | D | R | G | V | M | T | A | F | M | Q | A | L | G | F | T | T | Q | Q | G | G | W | E | K | C | G |
Template Known Secondary structure |   |
 |
| T | T |
| S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | S |
| S |
| . |
|  |  |  |  |
|
| T | T |
| S | T |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |
| S | S | S |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | |
. | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |