Job Description Q46916 Confidence 100.00% Date Thu Jan 5 12:35:51 GMT 2012 Rank 4 Aligned Residues 404 % Identity 11% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		R	Y	W	I	V	V	M	L	F	I	V	T	S	F	N	Y	G	D	R	A	T	L	S	I	A	G	S	E	.	M	A	K	D	I	G	L	D	P	V	G	M	G	Y	V	F	S	A	F	S	W	A	Y	V	I	G	Q	I	P	G	G	W	L	L	D	R	F	G	S	K	R	V	Y	F	W	S	I	F	I	W	S
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I	T	G	M	L
Template Known Secondary structure			S																																																					T												T	T		T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	T	L	L	Q	G	F	V	D	I	F	S	G	F	G	I	I	V	A	L	F	T	L	R	F	L	V	G	L	A	E	A	P	S	F	P	G	N	S	R	I	V	A	A	W	F	P	A	Q	E	R	G	T	A	V	S	I	F	N	S	A	Q	Y	F	A	T	V	I	F	A	P	I	M	G	W	L	T	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I	M	F	T	I
Template Known Secondary structure			T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	W	S	H	V	F	F	F	M	G	G	L	G	I	V	I	S	F	I	W	L	K	V	I	H	E	P	N	Q	H	P	G	V	N	K	K	E	L	E	Y	I	A	A	G	G	A	L	I	N	M	D	Q	Q	N	T	K	V	K	V	P	F	S	V	K	W	G	Q	I	K	Q	L	L	G	S	R	M	M	I	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L
Template Known Secondary structure																							S	S				S		S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					S														T	T	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	I	G	Q	Y	C	I	N	A	L	T	Y	F	F	I	T	W	F	P	V	Y	L	V	Q	A	R	G	M	S	I	L	K	A	G	F	V	A	S	V	P	A	V	C	G	F	I	G	G	V	L	G	G	I	I	S	D	W	L	M	R	R	T	G	S	L	N	I	A	R	K	T	P	I	V	M	G	M	L	L
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		Y	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	.	.	.	.	.	.	.	G	T	I	M	S
Template Known Secondary structure																						T	T	S	S	S																									T	T																		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.								.	.	.	.	300
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		S	M	V	M	V	F	C	N	Y	V	N	V	E	W	M	I	I	G	F	M	A	L	A	F	F	G	K	G	I	G	A	L	G	W	A	V	M	A	D	T	A	P	K	E	I	S	G	L	S	G	G	L	F	N	M	F	G	N	.	I	S	G	I	V	T	P	I	A	I	G	Y	I	V	G	T	T	G	S	F	N
Query Conservation																																																												.
Alig confidence																																																												.																			.
Template Conservation																																																																															.
Template Sequence		V	R	I	I	G	S	S	F	A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	.	F	Q
Template Known Secondary structure									T																																	S		G	G	G										T	T	T																					.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	L	I	Y	V	G	V	H	A	L	I	A	V	L	S	Y	L	V	L	V	G	D	I	K	R	I	E	L	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S	L	L	R
Template Known Secondary structure																						S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410