Job Description Q46916 Confidence 100.00% Date Thu Jan 5 12:35:51 GMT 2012 Rank 3 Aligned Residues 369 % Identity 17% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	V	M	L	F	I	V	T	S	F	N	Y	G	D	R	A	T	L	S	I	A	G	S	E	M	A	K	D	I	G	L	D	P	V	G	M	G	Y	V	F	S	A	F	S	W	A	Y	V	I	G	Q	I	P	G	G	W	L	L	D	R	F	G	S	K	R	V	Y	F	W	S	I	F	I	W	S	M	F	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L
Template Known Secondary structure																													T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	G	F	V	D	I	F	S	G	F	G	I	I	V	A	L	F	T	L	R	F	L	V	G	L	A	E	A	P	S	F	P	G	N	S	R	I	V	A	A	W	F	P	A	Q	E	R	G	T	A	V	S	I	F	N	S	A	Q	Y	F	A	T	V	I	F	A	P	I	M	G	W	L	T	H	E	V	G	W	S
Query Conservation
Alig confidence									.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		V	A	V	T	T	S	S	.	.	.	.	.	.	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R
Template Known Secondary structure									.	.	.	.	.	.																																T	S	S			S																							S	S
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.							.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	F	F	F	M	G	G	L	G	I	V	I	S	F	I	W	L	K	V	I	H	E	P	N	Q	H	P	G	V	N	K	K	E	L	E	Y	I	A	A	G	G	A	L	I	N	M	D	Q	Q	N	T	K	V	K	V	P	F	S	V	K	W	G	Q	I	K	Q	L	L	G	S	R	M	M	I	G	V	Y	I	G
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M
Template Known Secondary structure																					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																												.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	C	I	N	A	L	T	Y	F	F	I	T	W	F	P	V	Y	L	V	Q	A	R	G	M	S	I	L	K	A	G	F	V	A	S	V	P	A	V	C	G	F	I	G	G	V	L	G	G	I	I	S	D	W	L	M	R	R	T	G	S	L	N	I	A	R	K	T	P	I	V	M	G	M	L	L	S	M	V	M
Query Conservation
Alig confidence																																																																		.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	.	.	.	.	C	C	L	L	A	G	L	L	M	W	I	P
Template Known Secondary structure																	S		S	S																	T														T	T	T	T												.	.	.	.					T	S	S	S	S	S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	C	N	Y	V	N	V	E	W	M	I	I	G	F	M	A	L	A	F	F	G	K	G	I	G	A	L	G	W	A	V	M	A	D	T	A	P	K	E	I	S	G	L	S	G	G	L	F	N	M	F	G	N	I	S	G	I	V	T	P	I	A	I	G	Y	I	V	G	T	T	G	S	F	N	G	A	L	I	Y
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T
Template Known Secondary structure																										T	S	S	T	T						T				.																						S	T	T		T
Template Predicted Secondary structure																																								.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		421	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	H	A	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	G	L	L	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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