Job Description P76261 Confidence 100.00% Date Thu Jan 5 12:21:20 GMT 2012 Rank 1 Aligned Residues 417 % Identity 17% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	P	L	Q	A	G	S	E	V	L	L	P	L	I	G	L	P	C	S	V	A	H	L	P	L	R	K	Q	A	A	K	L	Q	T	V	R	S	I	G	L	V	Q	D	G	T	L	Y	C	S	S	I	F	G	Y	R	N	V	P	V	V	D	I	L	A	E	L	P	A	P	Q	P	L	L	R	L	T	I	D
Query Conservation
Alig confidence																				.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																				.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		L	F	Q	E	Q	A	E	R	S	E	K	L	R	T	E	S	Y	Q	.	.	.	.	.	.	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	.	.	.	.	.	P	E	Q	A	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T
Template Known Secondary structure							T	T											B	.	.	.	.	.	.		T	T	T	S	S														T	T		.	.	.	.	.	T	T	T												S
Template Predicted Secondary structure																				.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	I	K	G	S	P	V	L	I	Q	W	T	P	A	A	G	S	S	N	A	G	V	M	E	M	I	N	I	D	L	L	T	A	M	L	L	E	P	Q	L	P	Q	I	S	S	A	S	L	T	V	D	K	R	H	L	L	Y	G	N	G	L	V	D	S	L	P	Q	P	E	D	N	E	N	Y	Q	V	S	S
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		D	E	L	L	K	A	V	G	E	Q	L	S	R	E	C	A	K	Y	P	E	T	Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	.	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A
Template Known Secondary structure																	S	S		S	T	T	T	T							T	T								T								.											T						T	S		S		T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		Q	R	F	P	F	T	I	N	V	N	G	P	G	A	T	A	L	A	W	H	Y	L	P	T	Q	L	P	L	A	V	L	L	S	L	L	V	G	Y	I	A	W	L	A	T	A	Y	R	M	S	F	S	R	E	I	N	L	G	L	A	Q	H	E	F	E	L	F	C	Q	P	L	L	N	A	R	S	Q	Q	.	C	I
Query Conservation																																																																															.
Alig confidence			.	.	.	.	.	.																																.	.	.	.	.	.																																		.
Template Conservation			.	.	.	.	.	.																																.	.	.	.	.	.
Template Sequence		H	.	.	.	.	.	.	G	D	S	P	Q	A	V	L	S	L	G	D	Q	A	L	A	Q	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	.	.	.	.	.	.	D	D	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L
Template Known Secondary structure		T	.	.	.	.	.	.	T																			S		S	S		S							.	.	.	.	.	.		S														T	T												S	S		T	T
Template Predicted Secondary structure			.	.	.	.	.	.																																.	.	.	.	.	.
Template SS confidence
		369							370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400							.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	I	L	L	R	W	N	N	P	R	Q	G	W	I	S	P	D	V	F	I	P	I	A	E	E	H	H	L	I	V	P	L	T	R	Y	V	M	A	E	T	I	R	Q	R	H	V	F	P	M	S	S	Q	F	H	V	G	I	N	V	A	P	S	H	F	R	R	G	V	L	I	K	D	L	N	Q	Y	W	F
Query Conservation
Alig confidence																																																					.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	H	E	E	.	.	.	.	S	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	E	I	L	R
Template Known Secondary structure												T	T	S														T	T	T																	G	G	G				.	.	.	.													S	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.					.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		379	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure				.																		.
Query SS confidence				.																		.
Query Sequence		S	A	.	H	P	I	Q	Q	L	I	L	E	I	T	E	R	D	A	L	L	.	D	V	D	Y	R	I	A	R	E	L	H	R	K	N	V	K	L	A	I	D	D	F	G	T	G	N	S	S	F	S	W	L	E	T	L	R	P	D	V	L	K	I	D	K	S	F	T	A	A	I	G	S	D	A	V	N	S	T	V
Query Conservation				.																		.
Alig confidence				.																		.
Template Conservation
Template Sequence		A	H	S	N	L	G	A	R	L	T	L	E	I	G	E	E	Q	L	P	E	Q	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F
Template Known Secondary structure			T	G	G	G	T	T	T							G	G	G																	T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	I	I	I	A	L	G	Q	R	L	N	I	E	L	V	A	E	G	V	E	T	Q	E	Q	A	K	Y	L	R	R	H	G	V	H	I	L	Q	G	Y	L	Y	A	Q	P	M	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P	W
Template Known Secondary structure											T	T	T										S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.