Job Description P76261 Confidence 42.09% Date Thu Jan 5 12:21:20 GMT 2012 Rank 265 Aligned Residues 80 % Identity 19% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		402	.	.	.	.	.	.	.	410	.	.					.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.
Predicted Secondary structure													.	.	.	.																																																																.
Query SS confidence													.	.	.	.																																																																.
Query Sequence		R	I	A	R	E	L	H	R	K	N	V	.	.	.	.	K	L	A	I	D	D	F	G	T	G	N	S	S	F	S	W	L	E	T	L	R	P	D	V	L	K	I	D	K	S	F	T	A	A	I	G	S	D	A	V	N	S	T	V	T	D	I	I	I	A	L	G	Q	R	L	N	I	E	L	V	A	E	G	.	V
Query Conservation													.	.	.	.																																																																.
Alig confidence													.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	P	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	Q	K	M	T	Q	K	L	H	I	P	V	I	A	G	G	L	I
Template Known Secondary structure										T	T											S																	S							T	T			.	.	.	.	.	.	.	.	.	.	.	.																		S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.													.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	Q	E	Q	A	K	Y	L	R	R	H	G	V	H	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V
Template Known Secondary structure			S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions