Job Description P06996 Confidence 100.00% Date Thu Jan 5 10:59:51 GMT 2012 Rank 7 Aligned Residues 284 % Identity 14% Template d2pora_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.80

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	D	L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	K	D	V	D	G	D	Q	T	Y	M	R	L	G	F	K	G	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	V	G	S	F	D
Query Conservation
Alig confidence																				.	.																																							.	.	.	.	.	.									.
Template Conservation																				.	.																																							.	.	.	.	.	.									.
Template Sequence		E	V	K	L	S	G	D	A	R	M	G	V	M	Y	N	G	D	D	.	.	W	N	F	S	S	R	S	R	V	L	F	T	M	S	G	T	T	D	S	G	L	E	F	G	A	S	F	K	A	H	E	S	V	G	A	E	T	G	.	.	.	.	.	.	E	D	G	T	V	F	L	S	.	G	A	F	G	K	I	E
Template Known Secondary structure																	S	S		.	.																		T	T										G	G	G					T	T	T	.	.	.	.	.	.	S	S	S						.		T	T
Template Predicted Secondary structure																				.	.																																							.	.	.	.	.	.									.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.	.		.	.	.	.	.	70	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G	S	.	.	.	.	.	.	.	D	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	F	T
Query Conservation																														.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	G	D	A	L	G	A	S	E	A	L	F	G	D	L	Y	E	V	G	Y	T	D	L	D	D	R	G	G	N	D	I	P	Y	L	T	G	D	E	R	L	T	A	E	D	N	P	V	L	L	Y	T	Y	S	A	G	A	F	S	V	A	A	S	M	S	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		B										S				T	T	T	T			T	T	S		S	S				S	S	B	T	T	S	S		B	T	T	B										T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y
Query Conservation
Alig confidence		.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	K	V	G	E	T	S	E	D	D	A	Q	E	M	A	V	A	A	A	Y	T	F	G	N	Y	T	V	G	L	G	Y	E	K	I	D	S	.	.	.	.	.	.	.	P	D	T	A	L	M	A	D	M	E	Q	L	E	L	A	A	I	A	K	F	G	A	T	N	V	K	A	Y	Y	A	D	G	E
Template Known Secondary structure		.	.	.	.	.	B	S	T	T	S	S		B														T	T													.	.	.	.	.	.	.	S		T	T	T	S															T	T
Template Predicted Secondary structure		.	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
							138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
												264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N	L	G	R	G	Y	D	D	E	D	I	L	K	Y	V	D	V	G	A	T	Y	Y	F	N	K	N	M	S	T
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																											.															.	.	.	.	.	.	.
Template Conservation																																						.															.	.	.	.	.	.	.
Template Sequence		L	D	R	D	F	A	R	A	V	F	D	L	T	P	V	A	A	A	A	T	A	V	D	H	K	A	Y	G	L	S	V	D	S	T	F	G	.	A	T	T	V	G	G	Y	V	Q	V	L	D	I	D	.	.	.	.	.	.	.	T	I	D	D	V	T	Y	Y	G	L	G	A	S	Y	D	L	G	G	G	A	S	I
Template Known Secondary structure											T	T					S	S																			T	.	T													T	.	.	.	.	.	.	.	T	T																T	T
Template Predicted Secondary structure																																						.															.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.								.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	D	Y	K	I	N	L	L	D	D	N	Q	F	T	R	D	A	G	I	N	T	D	N	I	V	A	L	G	L	V	Y	Q	F
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	G	I	A	D	N	D	L	P	.	.	.	.	.	.	.	.	.	.	N	S	D	M	V	A	D	L	G	V	K	F	K	F
Template Known Secondary structure										S	S	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.											.	.	290	.	.	.	.	.	.	.	.	.	300	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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