Job Description P06996 Confidence 94.76% Date Thu Jan 5 10:59:51 GMT 2012 Rank 36 Aligned Residues 284 % Identity 8% Template c3rbhC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa Resolution 2.30 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																.	.	.	.	.																						.	.	.	.	.
Query SS confidence																																.	.	.	.	.																						.	.	.	.	.
Query Sequence		L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	K	D	V	D	G	D	Q	T	Y	M	R	L	G	F	K	G	.	.	.	.	.	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	.	.	.	.	.	S	A	E	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F
Query Conservation																																.	.	.	.	.																						.	.	.	.	.
Alig confidence																																.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		F	G	L	D	V	K	I	T	G	E	S	E	N	D	R	D	L	G	T	A	P	G	G	T	L	N	D	I	G	I	D	L	R	P	W	A	F	G	Q	W	G	D	W	S	A	Y	F	X	G	Q	A	V	A	A	T	D	T	I	E	T	D	T	L	P	D	K	S	Y	L	A	A	R	E	F	W	V	D	Y	A	G
Template Known Secondary structure																T	T	S	S	S	S	S																				T	T													S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		104				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		Q	.	.	.	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G	S	D	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E
Query Conservation			.	.	.
Alig confidence			.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		L	T	A	Y	P	G	E	H	L	R	F	G	R	Q	R	L	R	E	D	S	G	Q	W	Q	D	T	N	I	E	A	L	N	W	S	F	E	T	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	A	H	A	G	V	A	Q	R	F	S	E	Y	.	.	.
Template Known Secondary structure		S	S	S		T	T													T	T	S	S	S	B														S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S				.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																									.	.	.	180	.	.	.	.	.	.	.	.	.	190
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	T	S	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	T	D	L	D	E	L	A	P	E	D	K	D	R	T	H	V	F	G	D	I	S	T	Q	W	A	P	H	H	R	I	G	V	R	I	H	H	A	D	D	S	D	K	T	Y	T	G	Q	L	T	W	L	G	I	E	A	T	G	D	A	Y	N	Y	R	S	S	X	P	L	N	Y	W	A	S	A	T
Template Known Secondary structure		.	.	.	.	B	T	T			S			T	T	T	T	T														T	T																S															S	T	T		T	T		S		S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																														.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N	L	G	R	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	L	T	G	D	R	D	N	L	T	Q	S	G	D	V	N	A	F	G	V	D	L	G	L	R	W	N	I	D	E	Q	W	K	A	G	V	G	Y	A	R	G	S	G	G	G	K	D	G	E	E	Q	F	Q	Q	T	G	L	E	S	N	R	S	N	F	T	G	T	R	S	R	V	H	R	F	G	E	A	F	R	G
Template Known Secondary structure																														S	S	S														S	G	G	G	T	T						S	B							T	T	S	S	S	S				T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	D	I	L	K	Y	V	D	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	D	N	Q	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	S	N	L	Q	A	A	T	L	F	G	S	W	Q	L	R	E	D	Y	D	A	S	L	V	Y	H	K	F	W	R	V	D	D	D	S	D
Template Known Secondary structure			S	S	S													T	T	T													S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions