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Job DescriptionP06996
Confidence91.06%DateThu Jan 5 10:59:51 GMT 2012
Rank37Aligned Residues160
% Identity16%Templatec3qq2C_
PDB info PDB header:membrane protein/protein transportChain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   200.........210.. .......220.........230.........240.........250.........260.......
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Query Sequence  GVGGSITYDYEGF. . . GIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATR. . . . . . . . .
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Template Sequence  GLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGDGGGKVKGLHVGGYAAYVGDGGYYLDTVLRLGRYDQQYNIAGTDGG
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   774.....780.........790.........800.........810.........820.........830.........840.........850...
 
   268.270.........280........ .290.........300.........310......
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Query Sequence  VGSLGWANKAQNFEAVAQYQF. . . . DFGLRPSLAYLQSKGKNLGRGYDDEDIL. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RVTADYRTSGAAWSLEGGRRFELPNDWFAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATLGRLGLRFGRRIALAGGNI
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GGG




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   854.....860.........870.........880.........890.........900.........910.........920.........930...
 
   317..320.........330.........340.........350.........360.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . KYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
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Template Sequence  VQPYARLGWTQEFKSTGRHGRVELGAGVDAALGKGHNLYASYEYAAGDR. . . . . . . . INIPWSFHAGYRYSF
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   934.....940.........950.........960.........970.........980.. .......990.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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