Job Description P06996 Confidence 100.00% Date Thu Jan 5 10:59:51 GMT 2012 Rank 6 Aligned Residues 315 % Identity 19% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.															50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	D	L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	G	D	Q	T	Y	M	R	L	G	F	K	G	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	N	E	N	N	S	W	T	R	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																																																																							.	.
Template Sequence		Q	V	T	L	Y	G	T	I	K	A	G	V	E	V	S	R	V	K	D	A	G	T	Y	K	A	Q	G	G	K	S	K	T	A	T	Q	I	A	D	F	G	S	K	I	G	F	K	G	Q	E	D	L	G	N	G	M	K	A	I	W	Q	L	E	Q	K	A	S	I	A	G	.	.	T	N	S	G	W	G	N	R	Q
Template Known Secondary structure																					T	T	T			S	G	G	G	B																							S	S	S													T	T	S	.	.					S	S		S	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		A	F	A	G	L	K	F	Q	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G	S	D	.	.	.	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K
Query Conservation																																													.	.	.
Alig confidence									.																																				.	.	.
Template Conservation									.
Template Sequence		S	F	I	G	L	K	G	.	G	F	G	T	V	R	A	G	N	L	N	T	V	L	K	D	S	G	D	N	V	N	A	W	E	S	G	S	N	T	E	D	V	L	G	L	G	T	I	G	R	V	E	S	R	E	I	S	V	R	Y	D	S	P	V	F	A	G	F	S	G	S	V	Q	Y	V	P	R	D	N	A	N
Template Known Secondary structure									.	T	T																G	G	G	T							G	G	G	T	T	T	T	S						T	T														B	T	T
Template Predicted Secondary structure									.
Template SS confidence
		79	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence		N	G	N	P	S	G	E	G	F	T	S	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	.	.	.	.	.	.	.	D	R	A	E	T	Y	T	G	G	L
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	D	K	Y	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	S	S	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A
Template Known Secondary structure		S	T	T	S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S															T	T																	T	T	S		B			T	T		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.														.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T	Q	T	.	.	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N	L	G	R	G	Y	D	D	E	D	I	L	K	Y	V	D	V	G	A	T
Query Conservation																		.	.
Alig confidence																		.	.																												.
Template Conservation																																															.
Template Sequence		G	Y	D	A	N	D	L	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	G	.	N	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D
Template Known Secondary structure						T	T																S	S	S	T	T	T	T																B	T	.	T																T	T				G	G	G
Template Predicted Secondary structure																																															.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	D	N	Q	F	T	R	D	A	G	I	N	T	D	N	I	V	A	L	G	L	V	Y	Q	F
Query Conservation
Alig confidence																					.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	Q	G	.	.	.	.	.	K	G	A	G	K	V	E	Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure				S	S	S	S													S	.	.	.	.	.	S	T	T	S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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