Job Description P06996 Confidence 96.74% Date Thu Jan 5 10:59:51 GMT 2012 Rank 33 Aligned Residues 137 % Identity 11% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	.	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y
Query Conservation																																													.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																.												.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Template Sequence		K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	.	.	.	.	.	.	.	.	.	.	.	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	.	.	.	.	.	.	L	G	R	M	P	R	K	A	Q	G	V	Q	L	T	A	K	L	G	Y
Template Known Secondary structure			S	S												T	T		.	.	.	.	.	.	.	.	.	.	.		S	S													S	S	S										.	.	.	.	.	.			S	S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.												20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		287	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.									.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure				.	.																					.	.	.	.	.	.	.	.
Query SS confidence				.	.																					.	.	.	.	.	.	.	.
Query Sequence		Q	F	.	.	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N	L	G	R	.	.	.	.	.	.	.	.	G	Y	D	D	E	D	I	L	K	Y	V	D	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	D	N	Q	F	T	R	D	A	G	I	N	T	D
Query Conservation				.	.																					.	.	.	.	.	.	.	.
Alig confidence				.	.																					.	.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.
Template Sequence		P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	N	A	S	.	.	.	.	.	.	D	N
Template Known Secondary structure			T	T		T	T	T													S	S	B						S	S	S						B																S	S	S		S	S	S											S	S	S	S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.
		357	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	V	A	L	G	L	V	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure												S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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