Job Description P60778 Confidence 5.45% Date Thu Jan 5 12:07:09 GMT 2012 Rank 8 Aligned Residues 382 % Identity 9% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	S	N	R	I	K	L	T	W	I	S	F	L	S	Y	A	L	T	G	A	L	V	I	V	T	G	M	V	M	G	N	I	A	D	Y	F	N	L	P	V	S	S	M	S	N	T	F	T	F	L	N	A	G	I	L	I	S	I	F	L	N	A	W	L	M	E	I	V	P	L	K	T	Q	L	R	F	G	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	M	R	V	D	G	F	A	M	L	Y	T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	K	D	E	F	Y	L	L	V	L
Template Known Secondary structure		T																											S						S	T	T	B			S																													S	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	V	L	A	V	A	G	L	M	F	S	H	S	L	A	L	F	S	A	A	M	F	I	L	G	V	V	S	G	I	T	M	S	I	G	T	F	L	V	T	Q	M	Y	E	G	R	Q	R	G	S	R	L	L	F	T	D	S	F	F	S	M	A	G	M	I	F	P	M	I	A	A	F	L	L	A	R	S	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	G
Template Known Secondary structure												T	B		S	S										T	T									T	T	T	T	S																																S	S			S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Y	W	V	Y	A	C	I	G	L	V	Y	V	A	I	F	I	L	T	F	G	C	E	F	P	A	L	G	K	H	A	P	K	T	D	A	P	V	E	K	E	K	W	G	I	G	V	L	F	L	S	V	A	A	L	C	Y	I	L	G	Q	L	G	F	I	S	W	V	P	E	Y	A	K	G	L	G	M	S	L	N
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	.	.	.	.	.	.	.	.	.	.	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	S	E
Template Known Secondary structure																							T		T	T	S		T									S	.	.	.	.	.	.	.	.	.	.										T																		G	G	G	G		S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.											.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	G	T	L	V	S	N	F	W	M	S	Y	M	V	G	M	W	A	F	S	F	I	L	R	F	F	D	L	Q	R	I	L	T	V	L	A	G	L	A	A	I	L	M	Y	V	F	N	T	G	T	P	A	H	M	A	W	S	I	L	A	L	G	F	F	S	S	A	I	Y	T	T	I	I	T	L	G	S	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M
Template Known Secondary structure																								T			B																						T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		322	.	.																	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.									.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		T	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	P	K	L	V	N	F	V	L	T	C	G	T	I	G	T	M	L	T	F	V	V	T	G	P	I	V	E	H	S	.	.	.	.	.	.	.	.	G	P	Q	A	A	L	L	T	A	N	G	L	Y	A	V	V	F	V	M	C	F	L
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L	R
Template Known Secondary structure				S			S	S				B	G	G	G		S	S		T	T	T	S														T	T	T		T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	F	V	S	R	H	R	Q	H	N	T	L	T	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W
Template Known Secondary structure								S								S	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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