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Job DescriptionP60778
Confidence100.00%DateThu Jan 5 12:07:09 GMT 2012
Rank2Aligned Residues363
% Identity13%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   910.........20.........30.........40.........50.........60.........70.........80........
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Query Sequence  LTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVA
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Template Sequence  LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL
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   910.........20.........30.........40.........50.........60.........70.........80........
 
   8990.........100.........110.........120.........130.........140.........150.........160........
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Query Sequence  GLMFSHSLALFSAAMFILGVVSGITMSIGTFLVTQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSIEWYWVYAC
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Template Conservation      
     
     
 
                                                             
Template Sequence  VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
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Query Sequence  IGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWG. . IGVLFLSVAALCYILGQLGFISWVPEYAKGLGMSLNDAGTL
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Template Sequence  LVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   247..250.........260.........270.........280.........290 .........300.........310.........320..
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Query Sequence  VSNFWMSYMVGMWAFSFILRFFDLQRILTVLAGLAAILMYVFNT. . . . GTPAHMAWSILALGFFSSAIYTTIITLGSQQT
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Template Conservation                                                                                  
Template Sequence  FILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF
Template Known Secondary structure  TTTTTTSSSSSTSSTTT
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   249250.........260.........270.........280.........290.........300.........310.........320........
 
   323......330.........340.........350.........360.........370.
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Query Sequence  KVPSPKLVNFVLTCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVV
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Template Conservation 
   
            
      
 
 
                    
Template Sequence  PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIV
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   329330.........340.........350.........360.........370.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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