Job Description P0AEA5 Confidence 9.62% Date Thu Jan 5 11:22:52 GMT 2012 Rank 39 Aligned Residues 81 % Identity 12% Template d1m9fd_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.73

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		M	F	K	Q	Y	L	Q	V	T	K	P	G	I	I	F	G	N	L	I	S	V	I	G	G	F	L	L	A	S	K	G	S	I	D	Y	P	L	F	I	Y	T	L	V	G	V	S	L	V	V	A	S	G	C	V	F	N	N	Y	I	D	.	.	.	R	D	I	D	R	K	M	E	R	T	K	N	R	V	L	V	K
Query Conservation																																																														.	.	.
Alig confidence																												.	.	.	.																															.	.	.									.
Template Conservation																												.	.	.	.																																										.
Template Sequence		T	L	N	A	W	V	K	V	V	E	E	K	A	F	S	P	E	V	I	P	M	F	S	A	L	S	.	.	.	.	E	G	A	T	P	Q	D	L	N	T	M	L	N	T	V	G	G	H	Q	A	A	M	Q	M	L	K	E	T	I	N	E	E	A	A	E	W	D	R	L	H	P	.	V	A	M	G	P	I	A	P
Template Known Secondary structure													S	T	T		T	T									T	.	.	.	.	T	T												T			S																							S		.				S	S			T
Template Predicted Secondary structure																												.	.	.	.																																										.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.
		79	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	S	P	A	V	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	M	R	E	P	R	G	S
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions