Job Description P0AEA5 Confidence 94.92% Date Thu Jan 5 11:22:52 GMT 2012 Rank 1 Aligned Residues 189 % Identity 12% Template c3m9uD_ PDB info PDB header:transferase Chain: D: PDB Molecule:farnesyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from lactobacillus brevis atcc 367 Resolution 1.77 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	G	F	L	L	A	S	K	G	S	I	D	Y	P	L	F	I	Y	T	L	V	G	V	S	L	V	V	A	S	G	C	V	F	N	N	Y	I	D	R	D	I	D	R	K	M	E	R	T	K	N	R	V	L	V	K	G	L	I	S	P	A	V	S	L	V	Y	A	T	L	L	G	I	A	G	F	M	L	L
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		L	T	V	A	T	M	Q	S	L	G	V	T	F	V	P	E	R	H	W	R	P	V	M	A	L	E	L	L	H	T	Y	S	L	I	H	D	D	L	P	A	M	D	N	D	A	L	R	.	.	.	R	G	E	P	T	N	H	V	K	F	G	A	G	M	A	T	L	A	G	D	G	L	L	T	L	A	F	Q	W	L
Template Known Secondary structure										T	T																												S	T	T	T	T			S			.	.	.	T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		102	.	.	.	.	.	.	.	110	.	.														.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query Sequence		W	F	G	A	N	P	L	A	C	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	M	G	F	V	V	Y	V	G	V	Y	S	L	Y	M	K	R	H	S	V	Y	G	T	L	I	G	S	L	S	G	A	A	P	.	.	P	V	I	G	Y	C	A	V	T	G	E	F	D	S	G	A	A	I	L	L
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		T	A	T	D	L	P	A	T	M	Q	A	A	L	V	Q	A	L	A	T	A	A	G	P	S	G	M	V	A	G	Q	A	K	D	I	Q	S	E	H	V	N	L	P	L	S	Q	L	R	V	L	H	K	E	K	T	G	A	L	L	H	Y	A	V	Q	A	G	L	I	L	G	Q	A	P	E	A	Q	W	P	A	Y	L
Template Known Secondary structure		T	S	S	S																		S	T	T	T											T	T	T																T															T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	F	S	L	W	Q	M	P	H	S	Y	A	I	A	I	F	R	F	K	D	Y	Q	A	A	N	I	P	V	L	P	V	V	K	G	I	S	V	A	K	N	H	I	T	L	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	A	D	A	F	G	L	A	F	Q	I	Y	D	D	I	L	D	V	V	S	S	P	A	E	A	K	N	T	Y	P	G	K	L	G	L	I	G	A	N	Q	A	L	I	D	T	I
Template Known Secondary structure																												T	T	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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