Job Description P0AEA5 Confidence 6.88% Date Thu Jan 5 11:22:52 GMT 2012 Rank 42 Aligned Residues 80 % Identity 10% Template c2wlvA_ PDB info PDB header:virus protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal capsid domain of hiv-2 Resolution 1.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		M	F	K	Q	Y	L	Q	V	T	K	P	G	I	I	F	G	N	L	I	S	V	I	G	G	F	L	L	A	S	K	G	S	I	D	Y	P	L	F	I	Y	T	L	V	G	V	S	L	V	V	A	S	G	C	V	F	N	N	Y	I	D	R	D	I	.	.	.	D	R	K	M	E	R	T	K	N	R	V	L	V	K
Query Conservation																																																																	.	.	.
Alig confidence																												.	.	.	.																																		.	.	.						.	.
Template Conservation																												.	.	.	.																																										.	.
Template Sequence		T	L	N	A	W	V	K	L	V	E	E	K	K	F	G	A	E	V	V	P	G	F	Q	A	L	S	.	.	.	.	E	G	C	T	P	Y	D	I	N	Q	M	L	N	C	V	G	D	H	Q	A	A	M	Q	I	I	R	E	I	I	N	E	E	A	A	E	W	D	V	Q	H	P	.	.	I	P	G	P	L	P	A
Template Known Secondary structure														T	S		T	T									T	.	.	.	.	T	T												T	T	T	T																						T			.	.							T
Template Predicted Secondary structure																												.	.	.	.																																										.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.
		79	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	S	P	A	V	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	L	R	E	P	R	G	S
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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