Job Description P0AEA5 Confidence 44.29% Date Thu Jan 5 11:22:52 GMT 2012 Rank 23 Aligned Residues 192 % Identity 11% Template c2j1pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba in2 complex with ggpp Resolution 1.8 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	P	G	I	I	F	G	N	L	I	S	V	I	G	G	F	L	L	A	S	K	G	S	I	D	Y	P	L	F	I	Y	T	L	V	G	V	S	L	V	V	A	S	G	C	V	F	N	N	Y	I	D	R	D	I	D	R	K	M	E	R	T	K	N	R	V	L	V	K	G	L	I	S	P	A	V	S	L	V	Y
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Sequence		V	R	P	V	L	C	I	A	A	C	E	L	V	.	.	.	.	.	.	.	.	.	.	G	G	E	E	S	L	A	X	P	A	A	C	A	V	E	X	I	H	T	X	S	L	I	H	D	D	L	P	C	X	D	N	D	D	L	R	.	.	.	R	G	K	P	T	N	H	K	V	Y	G	E	D	V	A	V	L	A
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	.	.	T																										S	T	T	T	T			S			.	.	.	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.											.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	L	L	G	I	A	G	F	M	L	L	W	F	G	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	A	C	W	L	G	V	M	G	F	V	V	Y	V	G	V	Y	S	L	Y	M	K	R	H	S	V	Y	G	T	L	I	G	S	L	S	G	A	A	P	P	V	I	G	Y	C	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	A	L	L	S	F	A	F	E	H	L	A	S	A	T	S	S	E	V	S	P	A	R	V	V	R	A	V	G	E	L	A	K	A	I	G	T	E	G	L	V	A	G	Q	V	V	D	I	S	S	E	G	L	D	L	N	N	V	G	L	E	H	L	K	F	I	H	L	H	K	T	A	A	L	L	E	A	S	A
Template Known Secondary structure																	S		T	T	S																	S	T	T	T														T	T		S	S	S	S												T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		154						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		V	.	.	.	.	.	T	G	E	F	D	S	G	A	A	I	L	L	A	I	F	S	L	W	Q	M	P	H	S	Y	A	I	A	I	F	R	F	K	D	Y	Q	A	A	N	I	P	V	L	P	V	V	K	G	I	S	V	A	K	N	H	I	T	L	Y	I	I	A	F	A
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.																																			.	.	.
Template Conservation																																										.	.	.
Template Sequence		V	L	G	G	I	I	G	G	G	S	D	E	E	I	E	R	L	R	K	F	A	R	C	I	G	L	L	F	Q	V	V	D	D	I	L	D	V	T	K	S	.	.	.	S	K	L	T	Y	P	K	L	X	G	L	E	K	S	R	E	F	A	E	K	L	N	T	E	A	R
Template Known Secondary structure								T	T																																	.	.	.
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions