Job Description P0AEA5 Confidence 28.72% Date Thu Jan 5 11:22:52 GMT 2012 Rank 27 Aligned Residues 179 % Identity 11% Template c2e8xB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: s. cerevisiae geranylgeranyl pyrophosphate synthase in2 complex with magnesium and gpp Resolution 2.04 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	K	P	G	I	I	F	G	N	L	I	S	V	I	G	G	F	L	L	A	S	K	G	S	I	D	Y	P	L	F	I	Y	T	L	V	G	V	S	L	V	V	A	S	G	C	V	F	N	N	Y	I	D	R	D	I	D	R	K	M	E	R	T	K	N	R	V	L	V	K	G	L	I	S	P	A	V	S	L	V
Query Conservation
Alig confidence																						.	.	.	.																														.	.	.						.	.
Template Conservation																						.	.	.	.																														.	.	.						.	.
Template Sequence		L	L	K	P	G	K	N	F	R	L	N	L	I	V	Q	I	N	R	V	M	.	.	.	.	N	L	P	K	D	Q	L	A	I	V	S	Q	I	V	E	L	L	H	N	S	S	L	L	I	D	D	I	E	D	.	.	.	N	A	P	L	R	.	.	R	G	Q	T	T	S	H	L	I	F	G	V	P	S	T	I	N
Template Known Secondary structure			T	S	S																	.	.	.	.																													T	.	.	.	T		S			.	.	T	T
Template Predicted Secondary structure																						.	.	.	.																														.	.	.						.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	T	L	L	G	I	A	G	F	M	L	L	W	F	G	A	N	P	L	A	C	W	L	G	V	M	G	F	V	V	Y	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	L	Y	M	K	R	H	S	V	Y	G	T	L	I	G	S	L	S	G	A	A	P	P	V	I	G
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	N	Y	M	Y	F	R	A	M	Q	L	V	S	Q	L	T	T	K	E	P	L	Y	H	N	L	I	T	I	F	N	E	E	L	I	N	L	H	R	G	Q	G	L	D	I	Y	W	R	D	F	L	P	E	I	I	P	T	Q	E	M	Y	L	N	M	V	M	N	K	T	G	G	L	F	R	L	T	L	R	L	M
Template Known Secondary structure															T	T	S																																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence		Y	C	A	V	T	G	E	F	D	S	G	A	A	I	L	L	A	I	F	S	L	W	Q	M	P	H	S	Y	A	I	A	I	F	R	F	K	.	.	.	.	.	.	.	D	Y	Q	A	A	N	I	P	V	L	P	V	V	K
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence												.	.	.	.																							.	.	.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		E	A	L	S	P	S	H	G	H	S	.	.	.	.	L	V	P	F	I	N	L	L	G	I	I	Y	Q	I	R	D	D	Y	L	N	L	K	D	F	Q	M	S	F	A	E	D	I	T	E	G	K	L	S	F	P	I	V	H
Template Known Secondary structure										S		.	.	.	.	S																									T									T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions