Job Description P0AEA5 Confidence 16.23% Date Thu Jan 5 11:22:52 GMT 2012 Rank 31 Aligned Residues 174 % Identity 16% Template c1wy0A_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthetase from2 pyrococcus horikoshii ot3 Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	G	F	L	L	A	S	K	G	S	I	D	Y	P	L	F	I	Y	T	L	V	G	V	S	L	V	V	A	S	G	C	V	F	N	N	Y	I	D	R	D	I	D	R	K	M	E	R	T	K	N	R	V	L	V	K	G	L	I	S	P	A	V	S	L	V	Y	A	T	L	L	G	I	A	G	F	M	L	L
Query Conservation
Alig confidence																																																.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		P	F	V	V	L	T	S	T	E	A	V	G	G	D	P	L	R	A	I	Y	P	A	V	A	I	E	L	I	H	N	Y	S	L	V	H	D	D	I	M	D	M	D	E	T	R	R	.	.	.	.	.	G	K	P	T	V	H	R	I	W	G	V	N	M	A	I	L	A	G	D	L	L	F	S	K	A	F	E	A	V
Template Known Secondary structure									T	T	T	T	T	S		G	G	G	G																							T				S	T	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		102	.	.	.	.	.													.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Query Sequence		W	F	G	A	N	P	.	.	.	.	.	.	.	.	.	.	.	.	L	A	C	W	L	G	V	M	G	F	V	V	Y	V	G	V	Y	S	L	Y	M	K	R	H	S	V	Y	G	T	L	I	G	S	L	S	G	A	A	P	P	V	I	G	Y	C	A	V	.	.	T	G	E	F	D	S	G	A	A	I	L	L	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template Conservation
Template Sequence		A	R	A	E	I	P	P	E	K	K	A	R	V	L	E	V	I	V	K	A	S	N	E	L	C	E	G	Q	A	R	D	L	E	F	E	K	K	S	T	V	T	I	E	E	Y	M	E	M	I	S	G	K	T	G	A	L	F	E	A	S	A	K	V	G	G	I	I	G	T	D	N	E	E	Y	I	K	A	L	S	S
Template Known Secondary structure			T			S																														T	T		S															T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.												.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	S	L	W	Q	M	P	H	S	Y	A	I	A	I	F	R	F	K	.	.	.	.	.	.	.	.	.	.	.	D	Y	Q	A	A	N	I	P	V	L	P	V	V	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	G	R	N	V	G	I	A	F	Q	I	W	D	D	V	L	D	L	I	A	D	E	K	K	L	G	K	P	V	G	S	D	I	R	K	G	K	K	T	L	I	V	A	H
Template Known Secondary structure																					S						T	S		S							T
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions