Phyre 2 alignment of P42593 with c3oc4A

Job Description P42593
Confidence 99.97% Date Thu Jan 5 12:01:40 GMT 2012

Rank 30 Aligned Residues 246

% Identity 24% Template c3oc4A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family; PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	.	.	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L	K	L	N	H	T	V	T	A	D	Q
Query Conservation																						.	.
Alig confidence																						.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	I	V	I	I	G	A	S	F	A	G	I	S	A	A	I	A	S	R	K	K	Y	P	Q	A	E	I	S	L	I	D	K	Q	A	T	V	G	Y	L	S	G	R	Y	I	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	R	R	Q	K	I	Q	L	L	L	N	R	E	V	V	A	X	D
Template Known Secondary structure								S															S	S	S							S	S	S			S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T						S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.															.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.

	454	.	.																.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Query Sequence	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	H	P	K	V	L	S	Y	L	D	V	L	R	.	D	K	A	P	V	G	N	K	V	A	I	I	G	C	G	G	I	G	F	D	T	A	M	Y	L	S	Q	P
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation
Template Sequence	V	E	N	Q	L	I	A	W	T	R	K	E	E	Q	Q	W	Y	S	Y	D	K	L	I	L	A	T	G	A	S	Q	F	S	T	Q	I	R	G	S	Q	T	E	K	L	L	K	Y	K	F	L	S	A	V	P	L	L	E	N	S	Q	T	V	A	V	I	G	A	G	P	I	G	X	E	A	I	D	F	L	V	K	X
Template Known Secondary structure	T	T	T	T							T	T								S										B						B	T	T	T		T	T				G	G	G									T		S								S													T
Template Predicted Secondary structure
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	E	S	T	S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L	S	R	G	V	K	M	I	P	G	V	S	Y
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	K	T	V	H	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	L	E	N	L	L	P	K	Y	F	D	K	E	X	V	A	E	V	Q	K	S	L	E	K	Q	A	V	I	F	H	F	E	E	T	V
Template Known Secondary structure	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S	S	S	T	T	T															T	T	T						T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	168	.	170	.	.	.	.																																						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.																.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.										.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence	Q	K	I	D	D	D	G	L	H	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	L	I	D	S	G	K	T	V	H	L	I	G	G	C	D	V	.	.	.	.	.	.	.	.	.	A
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	G	I	E	E	T	A	N	G	I	V	L	E	T	S	E	Q	E	I	S	C	D	S	G	I	F	A	L	N	L	H	P	Q	L	A	Y	L	D	K	K	I	Q	R	N	L	D	Q	T	I	A	V	D	A	Y	L	Q	T	S	V	P	N	V	F	A	I	G	D	C	I	S	V	X	N	E	P	V	A	E	T	F
Template Known Secondary structure							S	S							S	S						S						S			B				S	S			T	T	S		B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	B					G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

	654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	E	L	D	A	R	R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	A	P	L	V	N	N	A	V	R	T	G	L	V	V	A	N	N	L
Template Known Secondary structure																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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