Job Description P42593 Confidence 99.91% Date Thu Jan 5 12:01:40 GMT 2012 Rank 89 Aligned Residues 251 % Identity 20% Template c3kljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum Resolution 2.10 Å

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		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Q	K	K	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	.	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L	K	L	N	H	T	V	T	A
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		K	S	T	K	I	L	I	L	G	A	G	P	A	G	F	S	A	A	K	A	A	L	G	K	C	D	D	I	T	M	I	N	S	E	K	Y	L	P	Y	Y	R	P	R	L	N	E	I	I	A	K	N	K	S	I	D	D	I	L	I	K	K	N	D	W	Y	E	K	N	N	I	K	V	I	T	S	E	F	A	T	S
Template Known Secondary structure			B		S							S											T	T	T		S							S	S	S	S			B		G	G	G							S				G	G	G	T	B	S	S								T	T						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		452	.	.	.	.													.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.				.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		D	Q	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	.	.	.	H	P	K	V	L	S	Y	L	D	V	L	R	D	K	A	P	V	G	N	K	V	A	I	I	G	C	G	G	I	G	F	D	T	A	M	Y	L	S	Q
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		I	D	P	N	N	K	L	V	T	L	K	S	G	E	K	I	K	Y	E	K	L	I	I	A	S	G	S	I	A	N	K	I	K	V	P	H	A	D	E	I	F	S	L	Y	S	Y	D	D	A	L	K	I	K	D	E	C	K	N	K	G	K	A	F	I	I	G	G	G	I	L	G	I	E	L	A	Q	A	I	I	D
Template Known Secondary structure				T	T	T	T					T	T	S						S																T	T		S						S	S															S								S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	E	S	T	S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L	S	R	G	V	K	M	I	P	G	V	S
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	T	P	A	S	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	L	E	Y	P	L	E	R	Q	L	D	R	D	G	G	L	F	L	K	D	K	L	D	R	L	G	I	K	I	Y	T	N	S	N
Template Known Secondary structure			T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S	S		T	T	T	S														T	T	T						S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.																																						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.															.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.				.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		Y	Q	K	I	D	D	D	G	L	H	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	L	I	D	S	G	K	T	V	H	L	I	G	G	C	D	V	A	M	.	.	.	E	L	D	A	R
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	E	M	.	.	.	.	.	.	.	.	.	.	.	.	G	D	L	I	R	S	S	C	V	I	T	A	V	G	V	K	P	N	L	D	F	I	K	D	T	E	I	A	S	K	R	G	I	L	V	N	D	H	M	E	T	S	I	K	D	I	Y	A	C	G	D	V	A	E	F	Y	G	K	N	P	G	L	I	N
Template Known Secondary structure		G	G	G		.	.	.	.	.	.	.	.	.	.	.	.							S													G	G	G	T	T	S				B	S	S	S					T	T		B		S	S	T	T					G	G	G				T	T	B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.													.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	N	K	Q	G	E	V	A	G	L	N	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions