Job Description P42593 Confidence 99.95% Date Thu Jan 5 12:01:40 GMT 2012 Rank 44 Aligned Residues 245 % Identity 22% Template c3iwaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris Resolution 2.30 Å

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		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		K	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	.	.	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L	K	L	N	H	T	V	T	A	D
Query Conservation																								.	.
Alig confidence																								.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	V	V	V	I	G	A	V	A	L	G	P	K	A	A	C	R	F	K	R	L	D	P	E	A	H	V	T	M	I	D	Q	A	V	E	A	L	V	E	T	R	A	H	A	I	D	R	A	A	H	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	E	N	L	R	T	G	E	R
Template Known Secondary structure										S	S														T	T	S														S								T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																		.	.	.	.	60	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.								.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		Q	L	Q	A	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	H	P	K	V	L	S	Y	L	D	V	L	R	D	K	A	P	V	.	.	.	.	.	.	.	G	N	K	V	A	I	I	G	C	G	G	I	G	F	D	T	A	M	Y	L	S	Q	P	G	E	S	T	S	Q	N	I
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.																														.	.
Template Conservation																																																																																.	.
Template Sequence		R	T	L	K	Y	D	K	L	V	L	A	L	G	S	K	A	N	R	P	P	V	E	G	M	D	L	A	G	V	T	P	V	T	N	L	D	E	A	E	F	V	Q	H	A	I	S	A	G	E	V	S	K	A	V	I	V	G	G	G	F	I	G	L	E	M	A	V	S	L	A	D	M	W	G	I	D	T	T	.	.
Template Known Secondary structure							S														S		T	T	T	T	S	B	T						S													T	T	S		S								S																				.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L	S	R	G	V	K	M	I	P	G	V	S	Y	Q	K	I	D	.	D	D	G
Query Conservation																																																																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	L	A	D	Q	I	M	P	G	F	T	S	K	S	L	S	Q	M	L	R	H	D	L	E	K	N	D	V	V	V	H	T	G	E	K	V	V	R	L	E	G	E	N	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S	S	S	S	T	T	T	S															T	T						S									S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																				187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.																	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.										.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		L	H	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	L	I	D	S	G	K	T	V	H	L	I	G	G	C	D	V	A	M	.	.	.	.	.	.	.	.	.	E	L	D	A	R
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	A	R	V	I	T	D	K	R	T	L	D	A	D	L	V	I	L	A	A	G	V	S	P	N	T	Q	L	A	R	D	A	G	L	E	L	D	P	R	G	A	I	I	V	D	T	R	M	R	T	S	D	P	D	I	F	A	G	G	D	C	V	T	I	P	N	L	V	T	G	K	P	G	F	F	P	L	G	S
Template Known Secondary structure		B							S	S						S						S													T			B		T	T							T	T		B		S	S	T	T					G	G	G					B	T	T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	N	R	Q	G	R	V	I	G	T	N	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions