Job Description P42593 Confidence 99.90% Date Thu Jan 5 12:01:40 GMT 2012 Rank 91 Aligned Residues 288 % Identity 13% Template c3h8lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism Resolution 2.57 Å

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		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	.	.	.	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L	K	L	N	H	T	V	T	A	D
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		K	V	L	V	L	G	G	R	F	G	A	L	T	A	A	Y	T	L	K	R	L	V	G	S	K	A	D	V	K	V	I	N	K	S	R	F	S	Y	F	R	P	A	L	P	H	V	A	I	G	V	R	D	V	D	E	L	K	V	D	L	S	E	A	L	P	E	K	G	I	Q	F	Q	E	G	T	V	E	K	I	D
Template Known Secondary structure								S	S															G	G	G	S							S	S	S							S	S					S	S															T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		453	.	.	.																.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.						.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		Q	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	.	.	.	.	.	H	P	K	V	L	S	Y	L	D	V	L	R	D	K	A	P	V	G	N	K	V	A	I	I	G	C	G	G	I	G	F	D	T	A	M
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		A	K	S	S	M	V	Y	Y	T	K	P	D	G	S	M	A	E	E	E	Y	D	Y	V	I	V	G	I	G	A	H	L	A	T	E	L	V	K	G	W	D	K	Y	G	Y	S	V	C	E	P	E	F	A	T	K	L	R	E	K	L	E	S	F	Q	G	G	N	I	A	I	G	S	G	P	F	Y	Q	G	H	N	P
Template Known Secondary structure		T	T	T	T							T	T	S								S												G	G	G	S	B	T								S	S	S	T	T														S										B					S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	S	Q	P	G	E	S	T	S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L	S	R	G	V	K	M	I
Query Conservation
Alig confidence									.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		K	P	K	V	P	E	N	.	.	.	.	.	.	F	V	P	N	A	D	S	A	C	E	G	P	V	F	E	M	S	L	M	L	H	G	Y	F	K	K	K	G	M	L	D	K	V	H	V	T	V	F	S	P	G	E	Y	L	S	D	L	S	P	N	S	R	K	A	V	A	S	I	Y	N	Q	L	G	I	K	L	V
Template Known Secondary structure				B	S		T	T	.	.	.	.	.	.	S	S				S		S	S																	T	T	T		T	T	T								S	S	S	S	S	T	T	S																T
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.																		.	.	640	.	.	.	.	.	.	.	.	.	650	.	.		.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		P	G	V	S	Y	Q	K	I	D	D	D	G	L	H	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	Q	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	S	G	K	T	V	H	L	I	G	G	C	D	V	.	A	M
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																	.	.	.
Template Sequence		H	N	F	K	I	K	E	I	R	E	H	E	I	V	D	.	.	.	E	K	G	N	T	I	P	A	D	I	T	I	L	L	P	P	Y	T	G	N	P	A	L	K	N	S	T	P	D	L	V	D	D	G	G	F	I	P	T	D	L	N	M	V	S	I	K	Y	D	N	V	Y	A	V	G	D	A	N	S	M	T	V
Template Known Secondary structure			S								S	S					.	.	.	T	T	S						S																T	S		G	G	G	S		T	T	S		B		B	B	T	T	S	B	B	S	S		T	T					G	G	G	B	T	T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D	A	R	R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	K	L	G	Y	L	A	V	M	T	G	R	I	A	A	Q	H	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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