Job Description P42593 Confidence 99.90% Date Thu Jan 5 12:01:40 GMT 2012 Rank 93 Aligned Residues 256 % Identity 17% Template c3d8xB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 Resolution 2.80 Å

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		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.											.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	.	.	.	.	.	.	.	.	.	.	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L
Query Conservation																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	N	K	V	T	I	I	G	S	G	P	A	A	H	T	A	A	I	Y	L	A	R	A	E	I	K	P	I	L	Y	E	G	M	M	A	N	G	I	A	A	G	G	Q	L	T	T	T	T	E	I	E	N	F	P	G	F	P	D	G	L	T	G	S	E	L	M	D	R	M	R	E	Q	S	T	K	F	G	T	E	I
Template Known Secondary structure											S													T	T									S	S	G	G	G			T	T		G	G	G	G		S					S	T	T		T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		444	.	.	.	.	.																	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.					.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		K	L	N	H	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	D	Q	L	Q	A	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	.	.	.	.	H	P	K	V	L	S	Y	L	D	V	L	R	D	K	A	P	V	G	N	K	V	A	I	I	G	C
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		I	T	E	T	V	S	K	V	D	L	S	S	K	P	F	K	L	W	T	E	F	N	E	D	A	E	P	V	T	T	D	A	I	I	L	A	T	G	A	S	A	K	R	M	H	L	P	G	E	E	T	Y	W	Q	K	G	I	S	A	C	A	V	C	D	G	A	V	P	I	F	R	N	K	P	L	A	V	I	G	G
Template Known Secondary structure												S	S	S	S						T	T		T	T	S																						T	T					B	T	T	T			S						T	T	S	G	G	G	T	T	S							S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	I	G	F	D	T	A	M	Y	L	S	Q	P	G	E	S	T	S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	S	A	C	E	E	A	Q	F	L	T	K	Y	G	S	K	V	F	M	L	V	R	K	D	H	L	R	A	S	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	K	R	A
Template Known Secondary structure		S											T	T	T	S	S							S	S	S	S			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																																												.	.	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.								.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.																	.	.	.	.	.	640
Predicted Secondary structure																						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	R	G	V	K	M	I	P	G	V	S	Y	Q	K	I	D	D	D	.	.	.	.	.	.	.	G	L	H	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	L	I	D	S
Query Conservation																						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	N	E	K	I	E	I	L	Y	N	T	V	A	L	E	A	K	G	D	G	K	L	L	N	A	L	R	I	K	N	T	K	K	N	E	E	T	D	L	P	V	S	G	L	F	Y	A	I	G	H	T	P	A	T	K	I	V	A	G	Q	V	D	T	D	E	A	G	Y	I	K	T	V	P	G	S	S	L	T	S
Template Known Secondary structure					T	T						S									S	S	S	S									T	T	T	T								S						S							G	G	G	T	T	T	S		B		T	T	S		B				T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	V	H	L	I	G	G	C	D	V	A	M	E	L	D	A	R	R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	G	F	F	A	A	G	D	V	Q	D	S	K	Y	R	Q	A	I	T	S	A	G	S	G	C	M	A	A	L	D	A
Template Known Secondary structure		S	T	T					G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions