Job Description P42593 Confidence 99.12% Date Thu Jan 5 12:01:40 GMT 2012 Rank 253 Aligned Residues 229 % Identity 21% Template c2zrvC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn. Resolution 2.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		A	P	L	D	L	G	F	T	T	L	K	N	R	V	L	M	G	S	M	H	T	G	L	E	E	Y	P	D	G	A	E	R	L	A	A	F	Y	A	E	R	A	.	.	.	.	R	H	G	V	A	L	I	V	S	G	G	I	A	P	D	L	T	G	V	G	M	E	G	G	A	M	L	N	D	A	S	Q	I	P	H
Query Conservation																																											.	.	.	.
Alig confidence																						.	.	.	.	.	.	.															.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	T	K	F	F	R	K	E	I	S	V	P	V	M	V	T	G	M	T	.	.	.	.	.	.	.	G	G	R	N	E	L	G	R	I	N	K	I	I	A	E	V	A	E	K	F	G	I	P	M	G	V	G	S	Q	R	V	A	I	E	K	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	R	E	S
Template Known Secondary structure							T	T				S	S	S								.	.	.	.	.	.	.		S	S																		T															.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.													.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	T	I	T	E	A	V	H	Q	E	G	G	K	I	A	L	Q	I	L	H	T	G	R	Y	S	Y	Q	P	H	L	V	A	P	S	A	L	Q	A	P	I	N	R	F	V	P	H	E	L	S	H	E	E	I	L	Q	L	I	D	N	F	A	R	C	A	Q	L	A	R	E	A	G	Y	D	G	V	E	V	M	G
Query Conservation
Alig confidence									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	I	V	R	K	V	.	.	A	P	T	I	P	I	I	A	N	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	Q	L	V	K	G	Y	G	L	K	E	F	Q	D	A	I	Q	.	.	.	.	.	.	.	.	.	.	M	I	E	A	D	A	I	A	V	H	L
Template Known Secondary structure									.	.		S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	T	T	T												.	.	.	.	.	.	.	.	.	.		T	T		S
Template Predicted Secondary structure									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.																						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	G	Y	L	I	N	E	F	L	T	L	R	T	N	Q	R	S	D	Q	W	G	G	D	Y	R	N	R	M	R	F	A	V	E	V	V	R	A	V	R	E	R	V	G	N	D	F	I	I	I	Y	R	L	S	M	L	D	L	V	E	D	G	G	T	F	A	E	T	V	E	L	A	Q	A	I	E	A	A	G	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.												.	.	.	.	.							.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.												.	.	.	.	.							.	.	.	.
Template Sequence		N	P	A	Q	E	V	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	G	E	P	E	Y	Q	I	Y	A	L	E	K	L	R	D	I	S	K	E	L	.	.	S	V	P	I	I	V	K	E	S	G	N	.	.	.	.	.	G	I	S	M	E	T	.	.	.	.	A	K	L	L	Y	S	Y	G	I
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							T														.	.	S	S							S	S	S	.	.	.	.	.							.	.	.	.							T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.												.	.	.	.	.							.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.														.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.					.	.	.	.	.	.	210	.	.
		244	.	.	.	.	.	250	.	.	.																				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	I	N	T	G	I	G	W	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	R	I	P	T	I	A	T	P	V	P	R	G	A	F	S	W	V	T	R	K	L	K	G	H	V	S	L	P	L	V	T	T	N	R	I	N	D	P	Q	V	A	D	D	I	L	S	R	G	D
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.																								.
Template Conservation																																																								.	.																								.
Template Sequence		K	N	F	D	T	S	G	Q	G	G	T	N	W	I	A	I	E	M	I	R	D	I	R	R	G	N	W	K	A	E	S	A	K	N	F	L	D	W	G	V	P	T	A	A	S	I	M	E	V	R	Y	S	V	P	.	.	D	S	F	L	V	G	S	G	G	I	R	S	G	L	D	A	A	K	A	I	A	L	G	.
Template Known Secondary structure									B	T	S	B													T	T		T								T	T	T		S		B												S	T	.	.	T							S	S			S											T	.
Template Predicted Secondary structure																																																								.	.																								.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	M	V	S	M	A	R	P	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	I	A	G	M	A	L	P	V	L
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions