Job Description P42593 Confidence 99.97% Date Thu Jan 5 12:01:40 GMT 2012 Rank 25 Aligned Residues 311 % Identity 24% Template c2vdcI_ PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.																.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.								.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.	.	.	.	.	.
Query Sequence		A	E	L	L	S	K	A	Q	S	G	R	A	D	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	C	I	G	.	.	.	C	N	Q	A	C	L	D	Q	I	F	V	G	K	V	T	.	.	.	.	.	.	.	S	C	L	V	N	P	R	A	C	H	E	T	K	M	P	I	L	P	A	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	W	L	K	L	T	S	E	G	R	L	E	E	A	Y	E	V	S	Q	A	T	N	N	F	P	E	I	C	G	R	I	C	P	Q	D	R	L	C	E	G	N	C	V	I	E	Q	S	T	H	G	A	V	T	I	G	S	V	E	K	Y	I	N	D	T	A	W	D	Q	G	W	V	K	P	R	T	P	S	R	E
Template Known Secondary structure											T														S											G	G	G	S	G	G	G	G		G	G	G	G	S	S	S		S																		T							S		S	S
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Q	K	K	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L	K	L	N	H	T	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																														.	.																																.	.	.
Template Conservation																																														.	.
Template Sequence		L	G	L	S	V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	G	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G	L	L	V	Y	G	.	.	I	P	G	F	K	L	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A	G	V	I	Y	H	P	N	F	E	V	G	R	D
Template Known Secondary structure												S														T								S	S	S	S		S	T					T	.	.	S		T	T	T	S															T	T					T	T			B	T	T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
				450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.																		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	T	A	D	Q	L	Q	A	F	D	E	T	I	L	A	S	G	I	V	.	P	R	T	P	P	I	D	G	I	D	H	P	K	V	L	S	Y	L	D	V	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	A	P	V	G	N	K	V	A	I	I	G	C	G	G	I	G	F	D
Query Conservation		.	.																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	L	P	E	L	R	R	K	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G	L	G	N	I	V	A	A	L	D	Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E	N	G	S	L	N	A	A	G	K	H	V	V	V	L	G	G	G	D	T	A	M	D
Template Known Secondary structure		B							S	S		S														T	T		S			T	T	T	T																	T	T	T		S	S			T	T		S					S							S	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	M	Y	L	S	Q	P	G	E	S	T	S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L	S	R	G	V
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	V	R	T	A	I	R	Q	G	A	T	S	V	K	C	L	Y	R	R	D	R	K	N	M	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	R	E	V	A	H	A	E	E	E	G	V
Template Known Secondary structure									T	T		S							S	S		S	T	T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																																										330	.	.	.	.	.	.	.	.	.	340	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.																						.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	M	I	P	G	V	S	Y	Q	K	I	D	D	D	G	L	H	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G	V	R	A	V	R	I	H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P	E	L	K	V	T	R	W	G	T
Template Known Secondary structure							S	S	S											T	T														T	T																S						S													S	T	T	S		B		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
								636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	L	I	D	S	G	K	T	V	H	L	I	G	G	C	D	V	A	M	E	L	D	A	R	R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																					.
Template Conservation																												.
Template Sequence		L	L	V	D	H	R	T	K	M	T	N	M	D	G	V	F	A	A	G	D	I	V	R	G	A	S	.	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I
Template Known Secondary structure		B				T	T	T		B		S	S	T	T					G	G	G	G	S	S			.	S
Template Predicted Secondary structure																												.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low