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Job DescriptionP42593
Confidence99.05%DateThu Jan 5 12:01:40 GMT 2012
Rank274Aligned Residues200
% Identity13%Templatec2rghA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   376...380.........390.........400.........410. ........420.........430.........440........
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Query Sequence  NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG. . . . . . . QFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT
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Template Sequence  DLLIIGGGITGAGVAVQAAASGIKTGLIEXQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAPHIPKP
Template Known Secondary structure  S

STT


SSSTT
SGGGSS
S


GGGGGGT

TTSS
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   20.........30.........40.........50.........60.........70.........80.........90.........
 
   449450.........460.........470.........480.........490.........500.........510.........520........
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Query Sequence  VTADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGF
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Template Sequence  DPX. . . . . . . . . LLPIYEDEGATTFNXFSVKVAXDLYDKLANVTGTKYENYTL. TPEEVLEREPFLKKEGLKGAGV. . . .
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S

T
SSSTT

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TTS

TT....
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   100.. .......110.........120.........130.........140... ......150.........160.....
 
   529530.........540.........550.........560.........570.........580.........590.........600........
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Query Sequence  CNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YLDFRNNDARLVIDNIKKAAEDGAYLVSKXKAVGFLYEGDQIV
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TT
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   166...170.........180.........190.........200........
 
   609610.........620......
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Query Sequence  . . . . . . . INGETQVLAVDNVVICAG
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Template Sequence  GVKARDLLTDEVIEIKAKLVINTSG
Template Known Secondary structure  TTT

BS


G
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   209210.........220.........230...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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