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Job DescriptionP42593
Confidence99.96%DateThu Jan 5 12:01:40 GMT 2012
Rank43Aligned Residues260
% Identity24%Templatec2cduB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   376...380.........390...... ...400.........410.... .....420.........430.........440.........450
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Query Sequence  NLAVVGAGPAGLAFAINAAAR. . GHQVTLFDAHSEIGGQFN. . . IAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT
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Template Sequence  KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQVT
Template Known Secondary structure 

S
TT

SSS

SB


TT
SGGG
GGGGBS

TT

S
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   451..... ...460.........470.........480... ......490.........500........
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Query Sequence  ADQLQA. . . . . . . . . . . . . . . . . FDETILASGIVPRTPPIDGIDHPKVLS. . . . . YLDVLRDKAPVGNKVAIIGCGGIGF
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Template Conservation   

                                                                  
     
    
Template Sequence  NVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGA
Template Known Secondary structure  GGGTTTT


S





S
TTTTSTT
SSGGG
S

S
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   509510.........520.........530.........540.........550.........560.........570.........580........
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Query Sequence  DTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRG
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Template Sequence  ELAEAYSNQNYNVNLI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGHERVLYKYFDKEFTDILAKDYEAHG
Template Known Secondary structure  TTT
.....................................SSSSTTTTTS
TT
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   163......170........ .180.........190.........200.....
 
   589590.........600. ........610.........620.........630.... .....640.........650..
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Query Sequence  VKMIPGVSYQKID. DDGLHVVINGETQVLAVDNVVICAGQEPNRALA. . . . . . . . . . . . . . . QPLIDSGKTVHLIGGCDV
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Template Conservation 
 
     
  
        
    
  
  
 

 
 
  

  
          
 
 

  
 
    


 

   
Template Sequence  VNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA
Template Known Secondary structure  SS
TTTTS
S
S


GGGTTTS
B
TT

B


TTSB
SSTT
GGGB
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   206...210.........220.........230.........240.........250.........260.........270.........280.....
 
   653 ......660.........670..
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Query Sequence  A. . . . . . . . . MELDARRAIAQGTRLALEI
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Template Sequence  VHYNPTNSNAYIPLATNAVRQGRLVGLNL
Template Known Secondary structure  GGGT



TS
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   286...290.........300.........310....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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