Job Description P42593 Confidence 99.91% Date Thu Jan 5 12:01:40 GMT 2012 Rank 85 Aligned Residues 286 % Identity 16% Template c1y56A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii Resolution 2.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.								.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.
Query Sequence		V	A	D	D	I	L	S	R	G	D	A	D	M	V	S	M	A	R	P	F	L	A	D	A	E	L	L	S	K	A	Q	S	G	R	A	D	E	I	N	T	C	I	G	C	N	Q	A	C	L	D	Q	I	F	V	G	K	V	T	S	C	L	V	N	P	R	A	C	H	E	T	K	.	.	.	.	.	.	.	M	P
Query Conservation																																																																									.	.	.	.	.	.	.
Alig confidence											.									.	.	.	.	.	.	.	.	.	.	.	.		.															.											.	.													.	.	.	.	.	.	.
Template Conservation											.									.	.	.	.	.	.	.	.	.	.	.	.		.															.											.	.
Template Sequence		L	P	V	A	L	L	A	N	E	.	I	Y	W	L	T	T	S	N	.	.	.	.	.	.	.	.	.	.	.	.	E	.	G	R	K	R	G	A	F	T	F	G	P	V	P	M	.	T	V	N	G	V	K	G	L	E	A	.	.	R	R	I	K	V	K	D	G	M	K	I	E	R	Q	G	Y	Y	D	F	H	E
Template Known Secondary structure									T	T	.								T	.	.	.	.	.	.	.	.	.	.	.	.	T	.	S					S	S	S	S	S					.	B	S	S	S		T	T			G	.	.	G	G		B			T	T				B				T	T
Template Predicted Secondary structure											.									.	.	.	.	.	.	.	.	.	.	.	.		.															.											.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.													.		.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		I	L	P	A	V	Q	K	K	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	G	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	.	V	T	G	V	T	L	K	L	N
Query Conservation																																																																								.
Alig confidence																														.																																										.
Template Conservation																														.
Template Sequence		E	E	I	E	R	V	V	V	D	V	A	I	I	G	G	G	P	A	G	I	G	A	A	L	E	L	Q	Q	.	Y	L	T	V	A	L	I	E	E	R	G	W	L	G	G	D	M	W	L	K	G	I	K	Q	E	G	F	N	K	D	S	R	K	V	V	E	E	L	V	G	K	L	N	E	N	T	K	I	Y	L	E
Template Known Secondary structure										S							S											T	T	.	T								T	T	S	S	S	S		S	G	G	G	T		S			T	T	T	T													T			T	T					T	T
Template Predicted Secondary structure																														.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		447	.	.	450	.	.	.	.	.	.																		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.					.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		H	T	V	T	A	D	Q	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	H	P	K	V	L	S	Y	L	D	V	L	R	D	K	A	P	V	.	.	.	.	G	N	K	V	A	I	I	G	C	G	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		T	S	A	L	G	V	F	D	K	G	E	Y	F	L	V	P	V	V	R	G	D	K	L	I	E	I	L	A	K	R	V	V	L	A	T	G	A	I	D	S	T	M	L	F	E	N	N	D	M	P	G	V	F	R	R	D	F	A	L	E	V	M	N	V	W	E	V	A	P	G	R	K	V	A	V	T	G	S	K	A
Template Known Secondary structure											S	S	S								T	T								S																T	T	T	T	S	T	T													T	S		B		S		S						S	T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	F	D	T	A	M	Y	L	S	Q	P	G	E	S	T	S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	V	I	Q	E	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																										259	260	.	.	.	.	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.		.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.																			.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	G	V	K	M	I	P	G	V	S	Y	Q	K	I	D	.	D	D	G	L	H	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	L	I	D	S	G	K	T	V	H	L
Query Conservation																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	W	G	I	D	Y	V	H	I	P	N	V	K	R	V	E	G	N	E	K	V	E	R	V	I	D	M	N	N	H	E	Y	K	V	D	A	L	I	F	A	D	G	R	R	P	D	I	N	P	I	T	Q	A	G	G	K	L	R	F	R	R	G	Y	Y	S	P	V	L	D	E	Y	H	R	I	K	D	G	I	Y	V
Template Known Secondary structure				T							S	S							S	S	S							T	T							S																		T	T							T	T								T	T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	C	D	V	A	M	E	L	D	A	R	R	A	I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		A	G	S	A	V	S	I	K	.	.	P	H	Y	A	N	Y	L	E	G	K	L	V	G	A	Y	I
Template Known Secondary structure			S	T	T	T				.	.
Template Predicted Secondary structure										.	.
Template SS confidence
		347	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions