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Job DescriptionP42593
Confidence99.95%DateThu Jan 5 12:01:40 GMT 2012
Rank45Aligned Residues258
% Identity23%Templatec1lvlA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   374.....380.........390.........400.........410.........
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Query Sequence  KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   420.........430.........440......... 450.........460.........470.........480......
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Query Sequence  . . . . . PGKEEFYETLRYYRRMIEVTGVTLKLNHTV. . . . . . . . TADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLD
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Template Sequence  GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVIS. . ST
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   85....90.........100.........110.........120.........130.........140.........150.........160 ..
 
   487..490.........500.........510.........520.........530.........540.........550.........560......
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Query Sequence  VLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
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Template Sequence  EALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVVEARE
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   163......170.........180.........190....... ..200....
 
   567..570.........580.........590.........600......... 610.........620.........630....
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Query Sequence  KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVI. NGETQVLAVDNVVICAGQEPNRALA. . . . . . . . . . .
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Template Sequence  RILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNG
Template Known Secondary structure  SSSTTS
T
TT
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   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   635....640.........650.........660.........670..
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Query Sequence  . . . . . . QPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI
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Template Sequence  AAIAIDERCQTSMHNVWAIGDVAGEPM. LAHRAMAQGEMVAEII
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TT
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GGGG
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   285....290.........300.........310. ........320.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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