Job Description P42593 Confidence 99.92% Date Thu Jan 5 12:01:40 GMT 2012 Rank 84 Aligned Residues 284 % Identity 15% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																									.	.																																																		.	.	.	.	.	.
Query SS confidence																									.	.																																																		.	.	.	.	.	.
Query Sequence		K	N	L	A	V	V	G	A	G	P	A	G	L	A	F	A	I	N	A	A	A	R	G	.	.	H	Q	V	T	L	F	D	A	H	S	E	I	G	G	Q	F	N	I	A	K	Q	I	P	G	K	E	E	F	Y	E	T	L	R	Y	Y	R	R	M	I	E	V	T	G	V	T	L	K	L	N	.	.	.	.	.	.
Query Conservation																									.	.																																																		.	.	.	.	.	.
Alig confidence																									.	.																																				.														.	.	.	.	.	.
Template Conservation																																																														.
Template Sequence		R	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	Y	.	D	G	L	R	A	H	G	I	Q	V	V	H	D	S	A	T	G	I	D
Template Known Secondary structure										S	T	T										T	T		T	T	S							S		S	S				S	T	T	T						T	S	S		G	G	G	G				S	.						T	T						S
Template Predicted Secondary structure																																																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
							447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	H	T	V	T	A	D	Q	L	Q	A	F	D	E	T	I	L	A	S	G	I	V	P	R	T	P	P	I	D	G	I	D	H	P	K	V	L	S	Y	L	D	V	L	R	D	K	A	P	V	G	N	K	V	A	I	I	G	C	G	G	I	G	F	D	T	A	M	Y	L	S	Q	P	G	E	S	T
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	K	K	L	V	K	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	A	K	L	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G
Template Known Secondary structure			T	T	T						T	S						S													T	T	S	T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	T	S					S														S	S		T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.														.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.		.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		S	Q	N	I	A	G	F	C	N	E	W	G	I	D	S	S	L	Q	Q	A	G	G	L	S	P	Q	G	M	Q	I	P	R	S	P	R	Q	I	V	M	L	Q	R	K	A	S	K	.	P	G	Q	G	L	G	K	T	T	G	W	I	H	R	T	T	L	L	S	R	G	V	K	M	I	P	G	V	S	Y	Q	K	I
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		T	V	V	I	A	P	P	A	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V
Template Known Secondary structure										S	S		B		T	T																		T	T								S		S	S		T	T														T	T	T	T	T		S						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		601	.	.	.	.	.		.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.																.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.			.	.	.	.	.	660	.
Predicted Secondary structure								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																	.	.
Query SS confidence								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																	.	.
Query Sequence		D	D	D	G	L	H	.	V	V	I	N	G	E	T	Q	V	L	A	V	D	N	V	V	I	C	A	G	Q	E	P	N	R	A	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	.	D	S	G	K	T	V	H	L	I	G	G	C	D	V	A	M	.	.	E	L	D	A	R	R	A
Query Conservation								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																	.	.
Alig confidence								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																	.	.
Template Conservation
Template Sequence		K	V	D	G	G	E	M	M	V	E	T	A	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	K	I	A	Q	I	A	G	L	T	N	D	A	G	W	C	P	V	D	I	K	T	F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G	Y	S	A
Template Known Secondary structure		S				T	T	T					T	T							S																		T			B	T	T	T	B	B		B		S	S	S		B	B	S	S	S	T	T					G	G	G	B			S	S	S		B	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		662	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	Q	G	T	R	L	A	L	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	Q	G	K	V	A	A	A	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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