Job Description P63235 Confidence 3.05% Date Thu Jan 5 12:08:01 GMT 2012 Rank 43 Aligned Residues 232 % Identity 8% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		211	.	.	.	.	.	.	.	.	220	.	.	.	.												.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	S	Y	M	G	V	E	A	S	A	T	H	V	.	.	.	.	.	.	.	.	.	.	.	N	E	M	S	N	P	G	R	D	Y	P	L	A	M	L	L	L	M	V	A	A	I	C	L	S	S	V	G	G	L	S	I	A	M	V	I	P	G	N	E	I	N	L	S	A	G	V	M	Q	T	F	T	V	L	M
Query Conservation																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence		F	L	F	F	F	F	W	E	M	M	L	V	P	M	Y	F	L	I	A	L	W	G	H	K	A	S	D	G	K	T	R	I	T	A	A	T	K	F	F	I	Y	T	Q	A	S	G	L	V	M	L	I	A	I	L	A	L	V	F	V	H	Y	N	A	T	G	V	W	T	F	N	.	.	.	.	.	.	.	Y	E	E
Template Known Secondary structure																											S	S																																			T	T	T	S					B	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.								.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.																								.
Query SS confidence																																																	.	.																								.
Query Sequence		S	H	V	A	P	E	I	E	W	T	V	R	V	I	S	A	L	L	L	L	G	V	L	A	E	I	A	S	W	I	V	G	P	S	R	G	M	Y	V	T	A	Q	K	N	L	L	P	.	.	A	A	F	A	K	M	N	K	N	G	V	P	V	T	L	V	I	S	Q	L	V	I	T	.	S	I	A	L	I	I	L
Query Conservation																																																	.	.																								.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.																								.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	N	T	P	M	S	S	G	V	E	Y	L	L	M	L	G	F	F	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	V	K	M	P	V	V	P	L	H	G	W	L	P	D	A	H	S	Q	A	P	T	A	G	S	V	D	L	A	G	I	L	L	K	T	A	A	Y	G	L	L
Template Known Secondary structure									T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T		S	S	T	T	T									S											T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230																		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	T	G	G	G	N	N	M	S	F	L	I	A	L	A	L	T	V	V	I	Y	L	C	A	Y	F	M	L	F	I	G	Y	I	V	L	V	L	K	H	P	D	L	K	R	T	F	N	I	P	G	G	K	G	V	K	L	V	V	A	I	V	G	L	L	T	S	I	M	A	F	I	V	S	F	L	P	P	D	N
Query Conservation
Alig confidence																																				.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	S	L	P	L	F	P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	.	.	.	.	A	Q	T	D	I	K	R	.	.	.	.	.	.	.	.	.	.	.	.	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L
Template Known Secondary structure					T	T	T	S																												.	.	.	.	T		S	B				.	.	.	.	.	.	.	.	.	.	.	.																		T	S
Template Predicted Secondary structure																																				.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.													.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	G	D	S	T	D	M	Y	V	E	L	L	V	V	S	F	L	V	V	L	A	L	P	F	I	L	Y	A	V	H	D	R	K	G	K	A	N	T	G	V	T	L	E	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E	R	I	H	T	R	D	M	R	M	M	G	G	L	W	S	K	M	K
Template Known Secondary structure																																			B	G	G	G			S	G	G	G	T		S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions