Job Description P63235 Confidence 3.11% Date Thu Jan 5 12:08:01 GMT 2012 Rank 42 Aligned Residues 196 % Identity 10% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		V	N	E	M	S	N	P	G	R	D	Y	P	L	A	M	L	L	L	M	V	A	A	I	C	L	S	.	S	V	G	G	L	S	I	A	M	V	I	P	G	N	E	I	N	L	S	A	G	V	M	Q	T	F	T	V	L	M	S	H	V	A	P	E	I	E	W	T	V	R	V	I	S	A	L	L	L	L	G	V	L
Query Conservation																												.
Alig confidence																												.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	A	I	Q	A	G	I	R	S	A	L	I	G	T	L	A	I	F	L	L	I	F	A	Y	Y	G	P	H	L	G	L	V	A	S	L	G	L	L	Y	T	S	A	.	.	.	.	.	.	.	.	.	.	.	L	I	L	G	L	L	S	G	L	G	A	T	L	T	L	P	G	I	A	G	L	V	L	T	L	G
Template Known Secondary structure																												T																	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310												.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	A	S	W	I	V	G	P	S	R	G	M	Y	V	T	A	Q	K	N	L	L	P	A	A	F	A	K	M	N	K	N	G	V	P	V	T	L	V	I	S	Q	L	V	I	T	S	I	A	L	I	I	L	T	N	T	G	G	G	N	N	M	S	F	L	I	A	L	A	L	T	V	V	I	Y	L	C	A	Y
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		A	A	V	D	G	N	V	L	S	F	E	R	I	K	E	E	L	R	A	G	K	.	.	K	L	R	Q	A	I	P	E	G	F	R	H	S	T	L	T	I	M	D	V	N	I	A	H	L	L	A	A	A	A	L	Y	Q	Y	A	T	G	P	V	R	G	F	A	V	I	L	A	I	G	V	V	A	S	V	F	S	N
Template Known Secondary structure																				T	T		.	.																																		T			T
Template Predicted Secondary structure																							.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	L	F	I	G	Y	I	V	L	V	L	K	H	P	D	L	K	R	T	F	N	I	P	G	G	K	G	V	K	L	V	V	A	I	V	G	L	L	T	S	I	M	A	F	I	V	S	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	F	S	R	H	L	L	E	R	L	A	D	R	G	E	I	R	P	P	M	W	L	V	D	P	R	F	N	F	M	G	P	A	R	Y	V	T	A	A	T	L	L	L	A	A	L	A	A	G
Template Known Secondary structure																T														S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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