Job Description P63235 Confidence 100.00% Date Thu Jan 5 12:08:01 GMT 2012 Rank 3 Aligned Residues 445 % Identity 13% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.					.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		T	G	K	A	K	Q	L	T	L	L	G	F	F	A	I	T	A	S	M	V	M	A	V	Y	E	Y	P	T	F	A	.	.	.	.	T	S	G	F	S	L	V	F	F	L	L	L	G	G	I	L	W	F	I	P	V	G	L	C	A	A	E	M	A	T	V	D	G	W	E	E	G	G	V	F	A	W	V	S	N	T
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.																																		.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	.	I	N	F	T	V	A	A	R	M	P
Template Known Secondary structure			G	G	G			B															S	T										T	T	T	S																								T								.	.	.							T	T	T	T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	P	R	W	G	F	A	A	I	S	F	G	Y	L	Q	I	A	I	G	F	I	P	M	L	Y	F	V	L	G	A	L	S	Y	I	L	K	W	P	A	L	N	E	D	P	I	T	K	T	I	A	A	L	I	I	L	W	A	L	A	L	T	Q	F	G	G	T	K	Y	T	A	R	I	A	K	V	G	F	F	A
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	.	.	.	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V
Template Known Secondary structure		S		T	T	T	T																																										.	.	.														T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	L	L	P	A	F	I	L	I	A	L	A	A	I	Y	L	H	S	G	A	P	V	A	I	E	M	D	S	K	T	F	F	P	D	F	S	K	V	G	T	L	V	V	F	V	A	F	I	L	S	Y	M	G	V	E	A	S	A	T	H	V	N	E	M	S	N	P	G	R	D	Y	P	L	A	M	L	L	L	M
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	.	.	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y
Template Known Secondary structure																		T							T	T				S	S			.	.	S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	A	I	C	L	S	S	V	G	G	L	S	I	A	M	V	I	P	G	N	E	I	N	L	S	A	G	V	M	Q	T	F	T	V	L	M	S	H	V	A	P	E	I	E	W	T	V	R	V	I	S	A	L	L	L	L	G	V	L	A	E	I	A	S	W	I	V	G	P	S	R	G	M	Y	V	T	A	Q	K
Query Conservation
Alig confidence																																								.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	.	.	.	.	.	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C
Template Known Secondary structure																												S		S										.	.	.	.	.		T																				T	T						T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	L	P	A	A	F	A	K	M	N	K	N	G	V	P	V	T	L	V	I	S	Q	L	V	I	T	S	I	A	L	I	I	L	T	N	T	G	G	G	N	N	M	S	F	L	I	A	L	A	L	T	V	V	I	Y	L	C	A	Y	F	M	L	F	I	G	Y	I	V	L	V	L	K	H	P	D	L	K	R	T
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	F	P	R	V	F	T	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L
Template Known Secondary structure				S	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.													T		G	G	G	T														T	T													T	T	S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.														.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	I	P	G	G	K	G	V	K	L	V	V	A	I	V	G	L	L	T	S	I	M	A	F	I	V	S	F	L	P	P	D	N	I	Q	G	D	S	T	D	M	Y	V	E	L	L	V	V	S	F	L	V	V	L	A	L	P	F	I	L	Y	A	V	H	D	R	K	G	K	A	N	T	G	V	T	L	E	P	I
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	.	.	.	.	.	.	.	.	.	.	.	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E
Template Known Secondary structure		T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G			.	.	.	.	.	.	.	.	.	.	.																			T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430												.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		483	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	Q	N	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Y	L	R	P	I
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.