Job Description P0AFH6 Confidence 99.86% Date Thu Jan 5 11:26:17 GMT 2012 Rank 2 Aligned Residues 235 % Identity 16% Template c2onkC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda Resolution 3.10 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	M	H	N	R	A	A	V	A	S	L	I	V	L	V	L	I	A	L	F	V	I	L	A	P	M	L	S	Q	F	A	Y	D	D	T	D	W	A	M	M	S	S	A	P	D	M	E	S	G	H	Y	F	G	T	D	S	S	G	R	D	L	L	V	R	V	A	I	G	G	R	I	S	L	M	V	G	V	A	A
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	L	F	S	A	L	L	A	L	L	S	S	I	I	L	L	F	V	L	L	P	V	A	A	T	V	T	L	Q	L	F	N	F	D	E	F	L	K	A	A	S	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	W	K	V	V	L	T	T	Y	Y	A	A	L	I	S
Template Known Secondary structure																														T	T	T	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.															160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	V	A	V	V	V	G	T	L	Y	G	S	L	S	G	Y	L	G	G	K	V	D	S	V	M	M	R	L	L	E	I	L	N	S	F	P	F	M	F	F	V	I	L	L	V	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	Q	N	I	L	L	I	F	V	A	I	G	M	V	S	W	L
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	I	A	V	I	F	G	T	P	L	A	Y	I	L	A	R	K	S	F	P	G	K	S	V	V	E	G	I	V	D	L	P	V	V	I	P	H	T	V	A	G	I	A	L	L	V	V	F	G	S	S	G	L	I	G	S	F	S	P	L	K	F	V	D	A	L	P	G	I	V	V	A	M	L	F	V	S	V	P
Template Known Secondary structure																		S				S	S														S														S	T	T	S	T	T	T	T	T		S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	A	R	I	V	R	G	Q	T	L	S	L	K	R	K	E	F	I	E	A	A	Q	V	G	G	V	S	T	S	G	I	V	I	R	H	I	V	P	N	V	L	G	V	V	V	V	Y	A	S	L	L	V	P	S	M	I	L	F	E	S	F	L	S	F	L	G	L	G	T	Q	E	P	L	S	S	W	G	A	L
Query Conservation
Alig confidence															.																																																								.	.	.	.
Template Conservation															.																																																								.	.	.	.
Template Sequence		I	Y	I	N	Q	A	K	E	G	F	A	S	V	.	D	V	R	L	E	H	V	A	R	T	L	G	S	S	P	L	R	V	F	F	T	V	S	L	P	L	S	V	R	H	I	V	A	G	A	I	M	S	W	A	R	G	I	S	E	F	G	A	V	V	V	I	A	Y	Y	.	.	.	.	P	M	I	A	P	T	L
Template Known Secondary structure														S	.											T	T										T																													T	T			S	.	.	.	.	S
Template Predicted Secondary structure															.																																																								.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	G	A	N	S	M	E	V	S	P	W	L	L	L	F	P	A	G	F	L	V	V	T	L	F	C	F	N	F	I	G	D	G	L
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		I	Y	E	R	Y	L	.	.	S	E	G	L	S	A	A	M	P	V	A	A	I	L	I	L	L	S	L	A	V	F	V	A	L	R	I	I
Template Known Secondary structure								.	.				G	G	G	T																					T
Template Predicted Secondary structure								.	.
Template SS confidence
		217	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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