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| Job Description | P76012 | | Confidence | 3.36% | Date | Thu Jan 5 12:17:23 GMT 2012 |
| Rank | 51 | Aligned Residues | 28 |
| % Identity | 21% | Template | c3ik5A_ |
| PDB info |
PDB header:viral protein/signaling protein | Chain: A: PDB Molecule:protein nef; |
PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide2 (a63-r80)
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| Resolution | 2.05 Å |
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54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
| Predicted Secondary structure | |
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| Query Sequence | |
E | E | E | W | S | E | F | F | F | W | L | L | N | S | L | E | C | L | D | Y | V | I | I | N | L | T | P | E |
| Query Conservation | |
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| Alig confidence | |
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| Template Conservation | |
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| Template Sequence | |
D | D | P | W | G | E | V | L | A | W | K | F | D | P | T | L | A | Y | T | Y | E | A | Y | V | R | Y | P | E |
| Template Known Secondary structure | |
S |
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| G | G | G | G | T |
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| G | G |
| Template Predicted Secondary structure | |
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| Template SS confidence | |
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204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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